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fix mouse gene info parsing #7129

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merged 2 commits into from
Feb 12, 2020
Merged

fix mouse gene info parsing #7129

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922a2a7
fix mouse gene info parsing
Feb 7, 2020
e14eaf0
correct regex
Feb 7, 2020
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2 changes: 1 addition & 1 deletion core/src/main/java/org/mskcc/cbio/portal/scripts/ImportGeneData.java
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Expand Up @@ -96,7 +96,7 @@ public static void importData(File geneFile, String genomeBuild) throws IOExcept
String strAliases = parts[4];
String strXrefs = parts[5];
String cytoband = parts[7];
String chr = cytoband.split("p|q|;|c")[0]; // various strange characters were found in this column
String chr = cytoband.split("p|q|;|c|\\|| ")[0]; // various strange characters were found in this column
int referenceGenomeId = DaoReferenceGenome.getReferenceGenomeByBuildName(genomeBuild).getReferenceGenomeId();
String desc = parts[8];
String type = parts[9];
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