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Added skin.show_gsva to service_config #7140

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Feb 11, 2020
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10 changes: 9 additions & 1 deletion docs/portal.properties-Reference.md
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@ This page describes the main properties within portal.properties.
- [Automatic hiding of putative passenger mutations](#automatic-hiding-of-putative-passenger-mutations)
- [Gene sets used for gene querying](#gene-sets-used-for-gene-querying)
- [Ehcache Settings](#ehcache-settings)
- [Enable GSVA functionality](#enable-gsva-functionality)

# Database Settings

Expand Down Expand Up @@ -354,4 +355,11 @@ For a list of counts of keys in cache per repository class:

For more information on Ehcache, refer to the official documentation [here](https://www.ehcache.org/documentation/3.7/index.html)

For more information on how Ehcache is implemented in cBioPortal refer to the [Caching](Caching.md) documentation.
For more information on how Ehcache is implemented in cBioPortal refer to the [Caching](Caching.md) documentation.

# Enable GSVA functionality

[GSVA functionality](https://github.com/cBioPortal/cbioportal/blob/master/docs/File-Formats.md#gene-set-data) can be enabled by uncommenting this line (and making sure it is set to `true`):
```
skin.show_gsva=true
```
4 changes: 2 additions & 2 deletions portal/src/main/webapp/config_service.jsp
Original file line number Diff line number Diff line change
Expand Up @@ -107,8 +107,8 @@
"oncoprint.custom_driver_annotation.tiers.default",
"ensembl.transcript_url",
"enable_persistent_cache",
"query_product_limit"

"query_product_limit",
"skin.show_gsva"
};


Expand Down
3 changes: 3 additions & 0 deletions src/main/resources/portal.properties.EXAMPLE
Original file line number Diff line number Diff line change
Expand Up @@ -291,3 +291,6 @@ ehcache.cache_type=none
# Limit the size of gene queries (number). gene count * sample count < query_product_limit
# This limit is enforced on the frontend.
# query_product_limit=1000000

# Enable gsva to query
# skin.show_gsva=true