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Dependency conflict: lightning 2.1.4 and scvi-tools 1.1.2 #83

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jpintar opened this issue Mar 16, 2024 · 1 comment
Open

Dependency conflict: lightning 2.1.4 and scvi-tools 1.1.2 #83

jpintar opened this issue Mar 16, 2024 · 1 comment
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@jpintar
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jpintar commented Mar 16, 2024

When I try installing all the solo dependencies from requirements.txt with conda/mamba, the following clash is reported:

error    libmamba Could not solve for environment specs
    The following packages are incompatible
    ├─ lightning 2.1.4**  is requested and can be installed;
    └─ scvi-tools 1.1.2**  is not installable because it requires
       └─ lightning >=2.0,<2.1 , which conflicts with any installable versions previously reported.

This can be fixed by downgrading lightning from 2.1.4 to >=2 (2.0.9.post0 ends up selected), but I don't know if that would cause anything to break.

I realise this is not following the official installation instructions, but I thought I'd mention it anyway...

@jpintar jpintar changed the title Dependency conflict Dependency conflict: lightning 2.1.4 and scvi-tools 1.1.2 Mar 16, 2024
@anyakors
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anyakors commented Apr 5, 2024

Thanks for reporting this! We've updated lightning dependency to >=2 to accommodate the possibility of conda/mamba installation and it does not conflict with the standard pip installation.

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