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load_VCF_Strelka does not specify separate() call #14

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ronkesm opened this issue Apr 24, 2024 · 1 comment
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load_VCF_Strelka does not specify separate() call #14

ronkesm opened this issue Apr 24, 2024 · 1 comment
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@ronkesm
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ronkesm commented Apr 24, 2024

Just a small bug report.

If you use load_VCF_Strelka before loading the tidyr package, the function returns this error:

Code
x=TINC::load_VCF_Strelka("Outputs/Resequenced/somatic.snvs.vcf.gz")

Output
Error in separate(., ID, into = c("chr", "from", "to", "ref", "alt"), : could not find function "separate"

Loading tidyr with library(tidyr) beforehand solves the issue

@caravagn caravagn added the bug Something isn't working label Apr 24, 2024
@Militeee
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Hi @ronkesm kudos for catching it. Fixed, thank you for reporting the bug.
S.

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