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Add extra fiber photometry metadata #26

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merged 2 commits into from
May 23, 2024
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weiglszonja
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  1. Adds more fiber photometry metadata (from the processed fiber photometry file) to the FiberPhotometryTable:
  • baseline_fluorescence: "The baseline fluorescence value for each fiber."
  • normalized_fluorescence: The normalized fluorescence value for each fiber.",
  • recording_target_type: "Defines whether recordings are made in axons vs cell bodies.",
    -signal_to_noise_ratio: "The signal to noise ratio for each fiber.",
    -cross_correlation_with_acceleration: "The cross-correlation between ΔF/F and acceleration."
    example snippet:
Screenshot 2024-05-23 at 13 52 24 (2)
  1. Renamed events table that holds the peak fluorescence event onset times and corrected the description

We can discuss on the mid-way if they want to add more, they have some "exclusion criteria" metrics as well, see at the bottom of #1 (all variables that start with "ex")

@weiglszonja
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@alessandratrapani to be reviewed after #25
sorry for all these PRs, I tried my best to organise them so they are easier to look at.
I think this is a minor improvement, just noticed some figures in the manuscript that use these metrics

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@alessandratrapani alessandratrapani left a comment

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ok

Base automatically changed from convert_sessions to main May 23, 2024 12:43
@weiglszonja weiglszonja merged commit d3530c5 into main May 23, 2024
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@weiglszonja weiglszonja deleted the add_extra_fiber_metadata branch May 23, 2024 12:43
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2 participants