updated doc

cbcrg · Aug 5, 2015 · 32307e7 · 32307e7
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commit 32307e7
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diff --git a/docs/index.rst b/docs/index.rst
@@ -11,13 +11,14 @@ Contents:
 .. toctree::
    :maxdepth: 2
 
-   quickstart
-   t_coffee_tutorial
-   trees
-   t_coffee_technical
-   release_notes
-   problems
-   developer
+   tcoffee_quickstart
+   tcoffee_manual
+   tcoffee_reference
+   trmsd_trees
+
+   tcoffee_release_notes
+   tcoffee_problems
+   tcoffee_developer
 
 
 
diff --git a/docs/index.rst~ b/docs/index.rst~
@@ -0,0 +1,23 @@
+.. T-Coffee documentation master file, created by
+   sphinx-quickstart on Sat May  5 16:57:28 2012.
+   You can adapt this file completely to your liking, but it should at least
+   contain the root `toctree` directive.
+
+T-Coffee's documentation!
+=========================
+
+Contents:
+
+.. toctree::
+   :maxdepth: 2
+
+   quickstart
+   t_coffee_tutorial
+   trees
+   t_coffee_technical
+   release_notes
+   problems
+   developer
+
+
+
diff --git a/docs/developer.rst → docs/tcoffee_developper.rst b/docs/developer.rst → docs/tcoffee_developper.rst
diff --git a/docs/t_coffee_tutorial.rst → docs/tcoffee_manual.rst b/docs/t_coffee_tutorial.rst → docs/tcoffee_manual.rst
@@ -1,6 +1,6 @@
 
 ##########################
-T-Coffee: Tutorial and FAQ
+T-Coffee Tutorial and FAQ
 ##########################
 ****************
 Before You Start

diff --git a/docs/problems.rst → docs/tcoffee_problems.rst b/docs/problems.rst → docs/tcoffee_problems.rst
diff --git a/docs/quickstart.rst → docs/tcoffee_quickstart.rst b/docs/quickstart.rst → docs/tcoffee_quickstart.rst
diff --git a/docs/t_coffee_technical.rst → docs/tcoffee_reference.rst b/docs/t_coffee_technical.rst → docs/tcoffee_reference.rst
diff --git a/docs/release_notes.rst → docs/tcoffee_release_notes.rst b/docs/release_notes.rst → docs/tcoffee_release_notes.rst
diff --git a/docs/trees.rst → docs/trmsd_manual.rst b/docs/trees.rst → docs/trmsd_manual.rst