Skip to content

Commit

Permalink
Added Circle continuous integration server descriptor
Browse files Browse the repository at this point in the history
  • Loading branch information
pditommaso committed Dec 10, 2015
1 parent 1ebfcc7 commit 3ede3a0
Show file tree
Hide file tree
Showing 2 changed files with 27 additions and 0 deletions.
9 changes: 9 additions & 0 deletions build/install-ncbi-blast-2.2.28+.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
set -x
set -e
if [ ! -e $HOME/ncbi-blast-2.2.28+ ]; then
cd $HOME
wget -q ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-x64-linux.tar.gz
tar xf ncbi-blast-2.2.28+-x64-linux.tar.gz
rm -rf ncbi-blast-2.2.28+-x64-linux.tar.gz
fi

18 changes: 18 additions & 0 deletions circle.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
dependencies:
cache_directories:
- $HOME/installbuilder-8.6.0
- $HOME/ncbi-blast-2.2.28+
pre:
- sudo apt-get -y update; sudo apt-get install -y antiword gcc gfortran libexpat1-dev
- bash build/install-instalbuilder-8.6.0.sh
- ln -s $HOME/installbuilder-8.6.0 $HOME/installbuilder
- bash build/install-ncbi-blast-2.2.28+.sh
- ln -s $HOME/ncbi-blast-2.2.28+ $HOME/ncbi-blast
override:
- bash -x build/build.sh tcoffee :
environment:
OSNAME: linux
OSARCH: x64
BUILD_REPO: $HOME/repo
INSTALLER: $HOME/installbuilder/bin/builder
WORKSPACE: $HOME

0 comments on commit 3ede3a0

Please sign in to comment.