Added Circle continuous integration server descriptor

build/install-installbuilder-8.6.0.sh

@@ -0,0 +1,8 @@
+set -x
+set -e
+if [ ! -e $HOME/installbuilder-8.6.0 ]; then
+  cd $HOME
+  wget -q https://s3-eu-west-1.amazonaws.com/cbcrg-eu/tcoffee-ci/installbuilder-8.6.0.tar.gz
+  tar xf installbuilder-8.6.0.tar.gz
+  rm -rf installbuilder-8.6.0.tar.gz
+fi

build/install-ncbi-blast-2.2.28+.sh

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+set -x
+set -e
+if [ ! -e $HOME/ncbi-blast-2.2.28+ ]; then
+  cd $HOME
+  wget -q ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-x64-linux.tar.gz
+  tar xf ncbi-blast-2.2.28+-x64-linux.tar.gz
+  rm -rf ncbi-blast-2.2.28+-x64-linux.tar.gz
+fi
+

circle.yml

@@ -0,0 +1,21 @@
+dependencies:
+  cache_directories:
+    - /home/ubuntu/installbuilder-8.6.0
+    - /home/ubuntu/ncbi-blast-2.2.28+
+  pre:
+    - sudo apt-get update --fix-missing && sudo apt-get install -y antiword make gcc gfortran bc wget curl unzip perl-modules libnet-ssleay-perl libcrypt-ssleay-perl libssl-dev libexpat1 libexpat1-dev liblwp-protocol-https-perl 
+    - sudo cpan -i Net::SSLeay
+    - sudo cpan -i XML::Simple
+    - sudo cpan -i SOAP::Lite
+    - bash build/install-installbuilder-8.6.0.sh
+    - ln -s $HOME/installbuilder-8.6.0 $HOME/installbuilder
+    - bash build/install-ncbi-blast-2.2.28+.sh
+    - ln -s $HOME/ncbi-blast-2.2.28+ $HOME/ncbi-blast 
+  override:
+    - bash -x build/build.sh tcoffee :
+        environment:
+            OSNAME: linux
+            OSARCH: x64
+            BUILD_REPO: $HOME/repo
+            INSTALLER: $HOME/installbuilder/bin/builder  
+            WORKSPACE: $HOME