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Added Circle continuous integration server descriptor
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set -x | ||
set -e | ||
if [ ! -e $HOME/installbuilder-8.6.0 ]; then | ||
cd $HOME | ||
wget -q https://s3-eu-west-1.amazonaws.com/cbcrg-eu/tcoffee-ci/installbuilder-8.6.0.tar.gz | ||
tar xf installbuilder-8.6.0.tar.gz | ||
rm -rf installbuilder-8.6.0.tar.gz | ||
fi |
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set -x | ||
set -e | ||
if [ ! -e $HOME/ncbi-blast-2.2.28+ ]; then | ||
cd $HOME | ||
wget -q ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-x64-linux.tar.gz | ||
tar xf ncbi-blast-2.2.28+-x64-linux.tar.gz | ||
rm -rf ncbi-blast-2.2.28+-x64-linux.tar.gz | ||
fi | ||
|
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dependencies: | ||
cache_directories: | ||
- /home/ubuntu/installbuilder-8.6.0 | ||
- /home/ubuntu/ncbi-blast-2.2.28+ | ||
pre: | ||
- sudo apt-get update --fix-missing && sudo apt-get install -y antiword make gcc gfortran bc wget curl unzip perl-modules libnet-ssleay-perl libcrypt-ssleay-perl libssl-dev libexpat1 libexpat1-dev liblwp-protocol-https-perl || true | ||
- sudo cpan -i Net::SSLeay | ||
- sudo cpan -i XML::Simple | ||
- sudo cpan -i SOAP::Lite | ||
- bash build/install-installbuilder-8.6.0.sh | ||
- ln -s $HOME/installbuilder-8.6.0 $HOME/installbuilder | ||
- bash build/install-ncbi-blast-2.2.28+.sh | ||
- ln -s $HOME/ncbi-blast-2.2.28+ $HOME/ncbi-blast | ||
override: | ||
- bash -x build/build.sh tcoffee : | ||
environment: | ||
OSNAME: linux | ||
OSARCH: x64 | ||
BUILD_REPO: $HOME/repo | ||
INSTALLER: $HOME/installbuilder/bin/builder | ||
WORKSPACE: $HOME |