Bugfix/Optimise: move indexing out of align group #21
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name: Run tutorials | |
on: | |
push: | |
pull_request: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: ${{ github.ref != 'refs/heads/main' }} | |
jobs: | |
build_n_push: | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
with: | |
lfs: false | |
- name: Install conda environment dependencies | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-version: latest | |
miniforge-variant: Mambaforge | |
python-version: "3.11" | |
mamba-version: "*" | |
channels: conda-forge,bioconda #,defaults # see: https://github.com/conda-forge/status/issues/144 | |
channel-priority: strict | |
activate-environment: JupyText | |
auto-update-conda: true | |
environment-file: tests/conda_tutorials_env.yaml | |
- name: Setup Jupyter kernel | |
run: | | |
python -m ipykernel install --user | |
- name: Run notebooks | |
working-directory: ./docs | |
run: ./convert.sh branch | |
- uses: actions/upload-artifact@v3 | |
with: | |
name: JupyterNotebooks | |
path: ./docs/*.ipynb | |
# - name: Publish | |
# uses: peaceiris/actions-gh-pages@v3 | |
# with: | |
# github_token: ${{ secrets.GITHUB_TOKEN }} | |
# publish_dir: ./docs |