S3C-SIS-TASK-11: Consensus sequences need to be manually imported. #108
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Relates to issue https://gitlab.ethz.ch/sars_cov_2/s3c-it-tasks/-/issues/11
rubicon
branch since this was the branch I found on eulerref_ambig_dels.fasta
ref_ambig_dels.fasta
ref_ambig_dels.fasta
.The rule finally writes a file
summary.json
to the current working directory.This is an initial attempt replace the manually triggered import script without coupling V-pipe to the infrastructure of the overall S3C workflow.
This pull request is accompanied by cbg-ethz/pangolin#3 which includes a script to read the created
summary.json
file and uploads it to the S3C database.Future work will be to complete the information in
summary.json
.