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FEATURE REQUEST: Incorporate deepredeff into pipeline #37

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darcyabjones opened this issue Jan 8, 2021 · 2 comments
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FEATURE REQUEST: Incorporate deepredeff into pipeline #37

darcyabjones opened this issue Jan 8, 2021 · 2 comments
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enhancement New feature or request

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@darcyabjones
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Deepredeff https://github.com/ruthkr/deepredeff/ has been on my radar for a while, but I haven't gotten around to trying it yet.

We need to evaluate it first because some of their numbers are a bit suspiciously good (I think it's just because their training data doesn't include a realistic negative set, i.e. their all like nuclear proteins so easier to distinguish than hydrophobins etc.).
I'm sure it's fine but we'll see, especially while it's still un-reviewed.

Paper is here: https://www.biorxiv.org/content/10.1101/2020.07.08.193250v1.abstract
@darcyabjones darcyabjones added the enhancement New feature or request label Jan 8, 2021
@darcyabjones
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Now published: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-04293-3

@darcyabjones
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This was introduced with tag 1.2.0-beta

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