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@ccdmb

CCDM Bioinformatics

Pinned

  1. BioDendro BioDendro Public

    A package to cluster and visualise MS/MS spectral data

    Jupyter Notebook 10

  2. catastrophy catastrophy Public

    CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

    Python 5

  3. predector predector Public

    Effector prediction pipeline based on protein properties.

    Shell 10 7

Repositories

Showing 10 of 26 repositories
  • qcflow-rnaseq Public

    ✅ 🚨 QC and alignement pipeline for RNA-seq reads

    ccdmb/qcflow-rnaseq’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Jun 14, 2024
  • LR-toolkit Public

    🌱 Toolkit for long reads RNAseq data analysis

    ccdmb/LR-toolkit’s past year of commit activity
    Nextflow 1 0 3 0 Updated Jan 17, 2024
  • ccdmb.github.io Public

    Front page for the CCDM bioinformatics group.

    ccdmb/ccdmb.github.io’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Nov 13, 2023
  • predector-utils Public

    Utilities for running the predector pipeline.

    ccdmb/predector-utils’s past year of commit activity
    Python 0 Apache-2.0 0 2 0 Updated Jun 14, 2023
  • predector Public

    Effector prediction pipeline based on protein properties.

    ccdmb/predector’s past year of commit activity
    Shell 10 Apache-2.0 7 10 (1 issue needs help) 0 Updated Jun 13, 2023
  • nanopore_assembly Public
    ccdmb/nanopore_assembly’s past year of commit activity
    Nextflow 0 0 0 0 Updated May 10, 2023
  • barley-DH-pow-rnaseq Public

    RNA-seq analysis of barley double haploid (DH) lines from Baudin / Eth069 cross during powdery mildew disease

    ccdmb/barley-DH-pow-rnaseq’s past year of commit activity
    0 MIT 0 0 0 Updated May 2, 2023
  • R_Script_templates Public

    Example templates for bioinformatics analyses

    ccdmb/R_Script_templates’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 18, 2023
  • catastrophy Public

    CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

    ccdmb/catastrophy’s past year of commit activity
    Python 5 BSD-3-Clause 0 2 0 Updated Jan 16, 2023
  • wheat-agr-tanspot Public

    RNA-seq analysis of wheat AGR during tan spot infection

    ccdmb/wheat-agr-tanspot’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 9, 2022
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