TCLB_binder proposition

[mdzik]

I found that:

https://github.com/mdzik/TCLB_binder/blob/main/README.md

;]

Happy testing - there is only 2 models atm, but you could open terminal and compile any from my repo. Git is also installed I think, but is should be rather precompiled environment for educational and paper review purposes.

[TravisMitchell]

looks pretty cool! I'll hopefully be able to find some time in the next couple of weeks to test it out :)

[mdzik]

So..

I've more-or-less finished making click-and-play environment for TCLB

https://github.com/mdzik/TCLB_docker

mdzik@localhost:~/_TCLB/TCLB_docker$ source activate workspace_cpu
Activating workspace_cpu TCLB Environment
export configureargs
make .local/tclb_workspace__latest
make[1]: Entering directory '/home/mdzik/_TCLB/TCLB_docker'
make[1]: '.local/tclb_workspace__latest' is up to date.
make[1]: Leaving directory '/home/mdzik/_TCLB/TCLB_docker'
make configureargs="--disable-cuda --with-python --with-python-config=python3.8-config --enable-double --enable-keepcode --enable-rinside --enable-cpp11 --with-openmp --with-hdf5 --with-hdf5-lib=//usr/lib/x86_64-linux-gnu/hdf5/openmpi/ --with-hdf5-include=/usr/include/hdf5/openmpi" .local/config_workspace__latest 
make[1]: Entering directory '/home/mdzik/_TCLB/TCLB_docker'
echo ". config_all" > .local/config_workspace__latest
echo SIF=`pwd`"/$(echo .local/config_workspace__latest | sed 's/config/tclb/g')" > .local/config_workspace__latest
echo TCLB_ENV="$(echo .local/config_workspace__latest | sed 's/config/tclb/g' | sed 's/.*\///g')"  >> .local/config_workspace__latest
echo CONFIGUREARGS="\"--disable-cuda --with-python --with-python-config=python3.8-config --enable-double --enable-keepcode --enable-rinside --enable-cpp11 --with-openmp --with-hdf5 --with-hdf5-lib=//usr/lib/x86_64-linux-gnu/hdf5/openmpi/ --with-hdf5-include=/usr/include/hdf5/openmpi\"" >> .local/config_workspace__latest
make[1]: Leaving directory '/home/mdzik/_TCLB/TCLB_docker'
ln -fs  config_workspace__latest  .local/config_workspace_cpu
======================================================================
Remember to put path to TCLB source code into .local/config_all file!!
======================================================================
======================================================================
This is WorkSpace edition: juperlab command is avalible
======================================================================
scmd COMMAND - run COMMAND inside TCLB singularity environment
tclb MODEL FILE ARGS - run CLB/MODEL/main FILE ARGS inside TCLB singularity environment
tclbmpi MODEL FILE ARGS - run mpirun CLB/MODEL/main FILE ARGS inside TCLB singularity environment
R ARGS - run R inside TCLB singularity environment
make ARGS - run make ARGS inside singularity environment in TCLB path (current path is ignored)
deactivate - clear environment
tclb_help - print this message
(TCLB:tclb_workspace__latest) mdzik@localhost:~/_TCLB/TCLB_docker$ cd $TCLBBUILDPATH
(TCLB:tclb_workspace__latest) mdzik@localhost:~/TCLB$ ./configure $CONFIGUREARGS 
....lotsofoutput...
(TCLB:tclb_workspace__latest) mdzik@localhost:~/_TCLB/TCLB_docker$ jupyterlab
[I 2021-11-05 16:30:05.708 ServerApp] jupyterlab | extension was successfully linked.
[I 2021-11-05 16:30:06.531 ServerApp] nbclassic | extension was successfully linked.
[I 2021-11-05 16:30:06.629 ServerApp] nbclassic | extension was successfully loaded.
[I 2021-11-05 16:30:06.632 LabApp] JupyterLab extension loaded from /usr/local/lib/python3.8/dist-packages/jupyterlab
[I 2021-11-05 16:30:06.632 LabApp] JupyterLab application directory is /usr/local/share/jupyter/lab
[I 2021-11-05 16:30:06.640 ServerApp] jupyterlab | extension was successfully loaded.
[I 2021-11-05 16:30:06.641 ServerApp] Serving notebooks from local directory: /home/mdzik/_TCLB/TCLB_docker
[I 2021-11-05 16:30:06.641 ServerApp] Jupyter Server 1.11.1 is running at:
[I 2021-11-05 16:30:06.641 ServerApp] http://localhost:8888/lab?token=4963fb67259007759f6a7fd5b24e97f99581091a4834a550
[I 2021-11-05 16:30:06.641 ServerApp]  or http://127.0.0.1:8888/lab?token=4963fb67259007759f6a7fd5b24e97f99581091a4834a550
[I 2021-11-05 16:30:06.641 ServerApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[C 2021-11-05 16:30:06.651 ServerApp] 
    
    To access the server, open this file in a browser:
        file:///home/mdzik/.local/share/jupyter/runtime/jpserver-11594-open.html
    Or copy and paste one of these URLs:
        http://localhost:8888/lab?token=XXXX
     or http://127.0.0.1:8888/lab?token=XXXX

[mdzik]

And yes, its intended for standarized development/testing environment. Cuda environment is also there

[mdzik]

... if images are not there, they will be build by makefile