KeyError: 'calldata/GT'

[oushujun]

Hello,

I got this error while using @kern-lab/diploSHIC which uses your package to read vcf files. I submitted an issue under that package but when I further dug into the code, I think the problem may lie in your package.

Please refer to kern-lab/diploSHIC issue #3 for my vcf format information. I am not sure if the beagle-style vcf hearder is causing problems, but it seems that vcfFile["calldata/GT"] cannot get the genotype information correctly.

Please let me know if there could be a quick fix either in the code or in my vcf files.

Thanks!

Shujun

[oushujun]

Thanks for the help!

Shujun