CHANGELOG.md

Changelog

1.2.0 (2024-09-04)

Features

• bump CL, EFO, HsapDv, MmusDv, MONDO, UBERON ontology versions for CxG schema 5.2.0 (#217) (5bb43b9)

Misc

• Fix typo in python readme (#216) (30a6ba8)

1.1.0 (2024-07-08)

Features

• fetch term ID by term label (#212) (11c671d)

1.0.0 (2024-05-15)

Features

• update ontology_info.json for 5.1 (#207) (d5c8ae3)

Misc

• release 1.0.0 (60eef67)

0.8.0 (2024-04-15)

Features

• fetch ontology term synonyms (#200) (89c1725)

0.7.1 (2024-04-12)

BugFixes

• remove setuptools-scm (#197) (254b981)

0.7.0 (2024-04-11)

Features

• remove v from ontology_info.json (#196) (a1292a3)

Misc

• deploy api when ontology_info.json changes (#194) (40d58f6)
• update readmes (#171) (d38ba65)

BugFixes

• update notebooks (96c7213)

0.6.1 (2024-04-10)

BugFixes

• Preserve order of high_level_terms when matching against an input curated list of terms (#189) (8dca5f3)

0.6.0 (2024-04-09)

Features

• add get_term_children and get_term_parents (#186) (dfcd2c2)

0.5.0 (2024-04-09)

Features

• add term label to OntologyNode (#182) (326185c)
• fetch ontology term descriptions, if available (#181) (0120377)

Misc

• add doctesting to API (#176) (c0aec23)
• deprecate older version of cellxgene schema (#172) (186e762)
• move pytest configs to pyproject.toml (#175) (a90341b)

0.4.0 (2024-03-29)

Features

• build subgraph from term ID (#156) (3f4cd4b)

0.3.1 (2024-03-27)

Misc

• reformat examples in docstrings (#157) (e5528e1)

BugFixes

• move get_ontology_download_url. (#152) (8365411)
• ontology_parser.py defaults to latest (#153) (5b94d6e)

0.3.0 (2024-03-25)

Features

• write python API demo notebook (#101) (bfae292)

0.2.0 (2024-03-25)

Features

• add function to fetch curated ontology term lists (#141) (5c7db62)
• set-up docsite (#99) (b7591bc)

Misc

• enable code coverage (#143) (c52c436)
• use trusted publisher to publish pypi package. (#137) (5fc917b)

BugFixes

• make constant.py private (46d04a4)
• typos (76ae9fa)

0.1.2 (2024-03-18)

BugFixes

• update README.md for API (f606073)

0.1.1 (2024-03-18)

BugFixes

• python-api release version (#131) (3237651)

0.1.0 (2024-03-15)

Features

• add data to the python package (#87) (0eb6831)
• add is_valid_term_id method to OntologyParser (#115) (72c2073)
• include license file with python package (#85) (2be3d81)
• refactor ancestry mapping to include distance from descendant node + implement functions to support curated list term mapping (#96) (7fc3562)
• refer to ontology source filenames in ontology_info and return that in get_ontology_download_url (#106) (ff9d826)
• split all_ontology into individual files. (#93) (ead59e5)
• Support getting download link for ontology from source repo (#86) (fd55b76)

Misc

• automate testpypi releases (#118) (b5a1a66)
• clean-up ontology_parser single fetch and bulk fetch methods + account for acceptable non-ontology terms (#112) (2ef7435)
• deps-dev: bump semantic-version from 2.8.5 to 2.10.0 in /api/python (#98) (dfe0b39)

BugFixes

• imports for api (4cd3386)
• update requirements (#114) (9888f3d)

0.0.1 (2024-02-26)

Features

• Add API ontology querying module (68f3168)
• Add API ontology querying module (#39) (239ef2b)
• API: setup python library (211a099)
• API: setup python library (f60f897)
• API: Setup the library for development (1f7ce03)
• implement stubbed query functions (334deb5)
• set version regex for pyton api (3720dab)

Misc

• release tsmith/release-assets (63b782d)
• release tsmith/release-assets (#57) (6a6b02a)

BugFixes

• README.md (1eae21d)