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freebayes failed to build on Mac OS X 10.10.1 #14
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Rodrigo; So trying the change suggested there might fix it. Hope this helps. |
Hello Brad, Would it be possible to have a recipe on homebrew to do this ? I’m decent at keeping all my programs in /opt/src, but homebrew does a much nicer job in keeping up to date than anything I do. I can gladly run the tests for the patch. Thank you in advance, Rodrigo
MACOSX_RPATH is not specified for the following targets: BamTools This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done
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Rodrigo; |
Hi Brad, Here are the changes I made to compile it by source (Screen 1), and a text file with the transcript from the compilation (file enclosed). Hope all is well, and I hope this helps, Rodrigo Screen 1 Screen 2 Screen 3 Screen 4
CFLAGS=-Wall -O3 MACOSX_RPATH is not specified for the following targets: BamTools This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done
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Rodrigo; |
I'm equally confused... any ideas? |
Hi Rodrigo, Not too sure either; freebayes seems to install fine for me under 10.10.1; our brew config output looks almost identical. |
Closing this, @RodrigoGM. Feel free to reopen if it still isn't working for you. Hope everything is all set. |
OK. I have freebayes installed manually, but have not continued to try installing with brew lately. Thanks for all the help
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I'm attempting to build freebayes on a mac in several occasions. The build fails due to the smithwaterman library, though I'm not sure exactly why. When I attempt to install, the message below.
For more details I ran a
brew gist-logs freebayes
and it's located here https://gist.github.com/d748473463ac04ecc4b4Any help is appreciated !
hope all is well,
Rodrigo
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