- freebayes 160 Bayesian haplotype-based polymorphism discovery and genotyping.
- vcflib 121 a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
- vg 111 tools for working with variation graphs
- intervaltree 57 a minimal C++ interval tree implementation
Repositories contributed to
- simongog/sdsl-lite 632 Succinct Data Structure Library 2.0
- jltsiren/gcsa2 15 BWT-based index for graphs
- facebook/rocksdb 4,382 A library that provides an embeddable, persistent key-value store for fast storage.
- htailor/cpp_progress_bar 3 C++ function that implements a progress bar in console applications
- maxogden/dat 3,955 real time replication and versioning for data sets
Contributions in the last year 1,432 total Nov 30, 2014 – Nov 30, 2015
Longest streak 48 days November 30 – January 16
Current streak 8 days November 23 – November 30
- Pushed 17 commits to ekg/vg Nov 24 – Nov 30
- Pushed 9 commits to ekg/alignment-and-variant-calling-tutorial Nov 24 – Nov 25
- Pushed 7 commits to ekg/ekg.github.com Nov 24
1 Pull Request
- Merged #164 Including cyclic paths in graphs
5 Issues reported
- Open #167 N-containing reads never align, so it can appear that we never succeed in including them
- Open #166 make with `-j` requires many repetitions to fully build vg
- Open #5 assembling short references
- Closed #4 bad gateway for test data
- Open #163 Included path semantics: should we prevent partial mappings?