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Organizations

@gkno @vgteam

Pinned repositories

  1. vgteam/vg

    tools for working with genome variation graphs

    C++ 335 89

  2. freebayes

    Bayesian haplotype-based genetic polymorphism discovery and genotyping.

    C++ 331 149

  3. alignment-and-variant-calling-tutorial

    basic walk-throughs for alignment and variant calling from NGS sequencing data

    74 24

  4. intervaltree

    a minimal C++ interval tree implementation

    C++ 120 50

  5. fraction.js

    A fraction math library in javascript.

    JavaScript 92 29

  6. hhga

    haplotypes genotypes and alleles example decision synthesizer

    C++ 14 3

948 contributions in the last year

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Contribution activity

August 2018

Created a pull request in vgteam/vg that received 1 comment

base pair accurate dotplots

This PR adds a new CLI interface which dumps the XG index into a dotplot .tsv that can be rendered as dotplots using the vg-dotplots script (which …

+132 −8 1 comment

Created an issue in vgteam/vg that received 4 comments

GFA input takes a very long time

I was trying to convert a GFA-formatted graph produced by seqwish to .vg format. I used zcat MHC.fa.gfa.gz | vg view -Fv - >MHC.fa.vg It took almos…

4 comments

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