make error in lib (on mac os 10.11.6 El Capitan)

[pchankh]

When running make in lib directory, I am getting the error

ndefined symbols for architecture x86_64:
"tensorflow::DEVICE_CPU", referenced from:
___cxx_global_var_init.15 in roi_pooling_op-db8872.o
___cxx_global_var_init.18 in roi_pooling_op-db8872.o
"tensorflow::DEVICE_GPU", referenced from:
___cxx_global_var_init.20 in roi_pooling_op-db8872.o
___cxx_global_var_init.22 in roi_pooling_op-db8872.o
"tensorflow::GetNodeAttr(tensorflow::AttrSlice const&, tensorflow::StringPiece, float*)", referenced from:
tensorflow::Status tensorflow::OpKernelConstruction::GetAttr(tensorflow::StringPiece, float*) const in roi_pooling_op-db8872.o
"tensorflow::GetNodeAttr(tensorflow::AttrSlice const&, tensorflow::StringPiece, int*)", referenced from:
tensorflow::Status tensorflow::OpKernelConstruction::GetAttr(tensorflow::StringPiece, int*) const in roi_pooling_op-db8872.o
"tensorflow::TensorShape::SlowCopyFrom(tensorflow::TensorShape const&)", referenced from:
tensorflow::TensorShape::TensorShape(tensorflow::TensorShape const&) in roi_pooling_op-db8872.o
"tensorflow::TensorShape::DestructorOutOfLine()", referenced from:
tensorflow::TensorShape::~TensorShape() in roi_pooling_op-db8872.o
"tensorflow::TensorShape::TensorShape()", referenced from:
RoiPoolOp<Eigen::ThreadPoolDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::GpuDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
"tensorflow::register_op::OpDefBuilderReceiver::OpDefBuilderReceiver(tensorflow::register_op::OpDefBuilderWrapper const&)", referenced from:
___cxx_global_var_init in roi_pooling_op-db8872.o
___cxx_global_var_init.11 in roi_pooling_op-db8872.o
"tensorflow::OpDefBuilder::Attr(tensorflow::StringPiece)", referenced from:
tensorflow::register_op::OpDefBuilderWrapper::Attr(tensorflow::StringPiece) in roi_pooling_op-db8872.o
"tensorflow::OpDefBuilder::Input(tensorflow::StringPiece)", referenced from:
tensorflow::register_op::OpDefBuilderWrapper::Input(tensorflow::StringPiece) in roi_pooling_op-db8872.o
"tensorflow::OpDefBuilder::Output(tensorflow::StringPiece)", referenced from:
tensorflow::register_op::OpDefBuilderWrapper::Output(tensorflow::StringPiece) in roi_pooling_op-db8872.o
"tensorflow::OpDefBuilder::OpDefBuilder(tensorflow::StringPiece)", referenced from:
tensorflow::register_op::OpDefBuilderWrapper::OpDefBuilderWrapper(char const*) in roi_pooling_op-db8872.o
"tensorflow::kernel_factory::OpKernelRegistrar::InitInternal(tensorflow::KernelDef const*, tensorflow::StringPiece, tensorflow::OpKernel* ()(tensorflow::OpKernelConstruction))", referenced from:
tensorflow::kernel_factory::OpKernelRegistrar::OpKernelRegistrar(tensorflow::KernelDef const*, tensorflow::StringPiece, tensorflow::OpKernel* ()(tensorflow::OpKernelConstruction)) in roi_pooling_op-db8872.o
"tensorflow::OpKernelContext::CtxFailure(tensorflow::Status)", referenced from:
RoiPoolOp<Eigen::ThreadPoolDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::GpuDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolGradOp<Eigen::GpuDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
"tensorflow::OpKernelContext::allocate_output(int, tensorflow::TensorShape const&, tensorflow::Tensor**)", referenced from:
RoiPoolingKernel(tensorflow::OpKernelContext*, tensorflow::Tensor const*, tensorflow::Tensor const*, float, int, int, int, int, int, int, tensorflow::TensorShape const&) in roi_pooling_op-db8872.o
RoiPoolingGradKernel(tensorflow::OpKernelContext*, tensorflow::Tensor const*, tensorflow::Tensor const*, tensorflow::Tensor const*, tensorflow::Tensor const*, float, int, int, int, int, int, int, int, tensorflow::TensorShape const&) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
"tensorflow::OpKernelContext::CtxFailureWithWarning(tensorflow::Status)", referenced from:
RoiPoolingKernel(tensorflow::OpKernelContext*, tensorflow::Tensor const*, tensorflow::Tensor const*, float, int, int, int, int, int, int, tensorflow::TensorShape const&) in roi_pooling_op-db8872.o
RoiPoolingGradKernel(tensorflow::OpKernelContext*, tensorflow::Tensor const*, tensorflow::Tensor const*, tensorflow::Tensor const*, tensorflow::Tensor const*, float, int, int, int, int, int, int, int, tensorflow::TensorShape const&) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
"tensorflow::OpKernelContext::input(int)", referenced from:
RoiPoolOp<Eigen::ThreadPoolDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::GpuDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolGradOp<Eigen::GpuDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
"tensorflow::KernelDefBuilder::TypeConstraint(char const*, tensorflow::DataType)", referenced from:
tensorflow::KernelDefBuilder& tensorflow::KernelDefBuilder::TypeConstraint(char const*) in roi_pooling_op-db8872.o
tensorflow::KernelDefBuilder& tensorflow::KernelDefBuilder::TypeConstraint(char const*) in roi_pooling_op-db8872.o
"tensorflow::KernelDefBuilder::Device(char const*)", referenced from:
___cxx_global_var_init.15 in roi_pooling_op-db8872.o
___cxx_global_var_init.18 in roi_pooling_op-db8872.o
___cxx_global_var_init.20 in roi_pooling_op-db8872.o
___cxx_global_var_init.22 in roi_pooling_op-db8872.o
"tensorflow::KernelDefBuilder::KernelDefBuilder(char const*)", referenced from:
tensorflow::register_kernel::Name::Name(char const*) in roi_pooling_op-db8872.o
"tensorflow::TensorShapeUtils::MakeShape(int const*, long long, tensorflow::TensorShape*)", referenced from:
RoiPoolOp<Eigen::ThreadPoolDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::GpuDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
"tensorflow::OpKernelConstruction::CtxFailure(tensorflow::Status)", referenced from:
RoiPoolOp<Eigen::ThreadPoolDevice, float>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::GpuDevice, float>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolGradOp<Eigen::GpuDevice, float>::RoiPoolGradOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
"tensorflow::OpKernelConstruction::CtxFailureWithWarning(tensorflow::Status)", referenced from:
RoiPoolOp<Eigen::ThreadPoolDevice, float>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::GpuDevice, float>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolGradOp<Eigen::GpuDevice, float>::RoiPoolGradOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
"tensorflow::OpDef::~OpDef()", referenced from:
tensorflow::OpRegistrationData::~OpRegistrationData() in roi_pooling_op-db8872.o
"tensorflow::Status::Status(tensorflow::error::Code, tensorflow::StringPiece)", referenced from:
tensorflow::Status tensorflow::errors::InvalidArgument<char const*, int>(char const*, int) in roi_pooling_op-db8872.o
tensorflow::Status tensorflow::errors::InvalidArgument<char const*>(char const*) in roi_pooling_op-db8872.o
"tensorflow::strings::FastInt32ToBufferLeft(int, char*)", referenced from:
tensorflow::strings::AlphaNum::AlphaNum(int) in roi_pooling_op-db8872.o
"tensorflow::strings::StrCat(tensorflow::strings::AlphaNum const&)", referenced from:
tensorflow::Status tensorflow::errors::InvalidArgument<char const*>(char const*) in roi_pooling_op-db8872.o
"tensorflow::strings::StrCat(tensorflow::strings::AlphaNum const&, tensorflow::strings::AlphaNum const&)", referenced from:
tensorflow::Status tensorflow::errors::InvalidArgument<char const*, int>(char const*, int) in roi_pooling_op-db8872.o
"tensorflow::OpKernel::OpKernel(tensorflow::OpKernelConstruction*)", referenced from:
RoiPoolOp<Eigen::ThreadPoolDevice, float>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::GpuDevice, float>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolGradOp<Eigen::GpuDevice, float>::RoiPoolGradOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
"tensorflow::OpKernel::~OpKernel()", referenced from:
RoiPoolOp<Eigen::ThreadPoolDevice, float>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, float>::~RoiPoolOp() in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::~RoiPoolOp() in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::GpuDevice, float>::RoiPoolOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::GpuDevice, float>::~RoiPoolOp() in roi_pooling_op-db8872.o
RoiPoolGradOp<Eigen::GpuDevice, float>::RoiPoolGradOp(tensorflow::OpKernelConstruction*) in roi_pooling_op-db8872.o
...
"tensorflow::internal::LogMessageFatal::LogMessageFatal(char const*, int)", referenced from:
tensorflow::core::RefCounted::~RefCounted() in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
void tensorflow::Tensor::FillDimsAndValidateCompatibleShape<1ul>(std::__1::array<long, 1ul>, tensorflow::gtl::ArraySlice) const in roi_pooling_op-db8872.o
tensorflow::TensorShape::dims() const in roi_pooling_op-db8872.o
void tensorflow::Tensor::FillDimsAndValidateCompatibleShape<1ul>(tensorflow::gtl::ArraySlice, std::__1::array<long, 1ul>) const in roi_pooling_op-db8872.o
tensorflow::KernelDefBuilder::~KernelDefBuilder() in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
...
"tensorflow::internal::LogMessageFatal::~LogMessageFatal()", referenced from:
tensorflow::core::RefCounted::~RefCounted() in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, float>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
void tensorflow::Tensor::FillDimsAndValidateCompatibleShape<1ul>(std::__1::array<long, 1ul>, tensorflow::gtl::ArraySlice) const in roi_pooling_op-db8872.o
tensorflow::TensorShape::dims() const in roi_pooling_op-db8872.o
void tensorflow::Tensor::FillDimsAndValidateCompatibleShape<1ul>(tensorflow::gtl::ArraySlice, std::__1::array<long, 1ul>) const in roi_pooling_op-db8872.o
tensorflow::KernelDefBuilder::~KernelDefBuilder() in roi_pooling_op-db8872.o
RoiPoolOp<Eigen::ThreadPoolDevice, double>::Compute(tensorflow::OpKernelContext*) in roi_pooling_op-db8872.o
...
"tensorflow::internal::CheckOpMessageBuilder::ForVar2()", referenced from:
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<int, int>(int const&, int const&, char const*) in roi_pooling_op-db8872.o
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<unsigned long, unsigned long>(unsigned long const&, unsigned long const&, char const*) in roi_pooling_op-db8872.o
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<long long, long long>(long long const&, long long const&, char const*) in roi_pooling_op-db8872.o
"tensorflow::internal::CheckOpMessageBuilder::NewString()", referenced from:
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<int, int>(int const&, int const&, char const*) in roi_pooling_op-db8872.o
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<unsigned long, unsigned long>(unsigned long const&, unsigned long const&, char const*) in roi_pooling_op-db8872.o
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<long long, long long>(long long const&, long long const&, char const*) in roi_pooling_op-db8872.o
"tensorflow::internal::CheckOpMessageBuilder::CheckOpMessageBuilder(char const*)", referenced from:
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<int, int>(int const&, int const&, char const*) in roi_pooling_op-db8872.o
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<unsigned long, unsigned long>(unsigned long const&, unsigned long const&, char const*) in roi_pooling_op-db8872.o
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<long long, long long>(long long const&, long long const&, char const*) in roi_pooling_op-db8872.o
"tensorflow::internal::CheckOpMessageBuilder::~CheckOpMessageBuilder()", referenced from:
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<int, int>(int const&, int const&, char const*) in roi_pooling_op-db8872.o
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<unsigned long, unsigned long>(unsigned long const&, unsigned long const&, char const*) in roi_pooling_op-db8872.o
std::__1::basic_string<char, std::__1::char_traits, std::__1::allocator >* tensorflow::internal::MakeCheckOpString<long long, long long>(long long const&, long long const&, char const*) in roi_pooling_op-db8872.o
"tensorflow::AttrSlice::AttrSlice(tensorflow::NodeDef const&)", referenced from:
tensorflow::Status tensorflow::OpKernelConstruction::GetAttr(tensorflow::StringPiece, int*) const in roi_pooling_op-db8872.o
tensorflow::Status tensorflow::OpKernelConstruction::GetAttr(tensorflow::StringPiece, float*) const in roi_pooling_op-db8872.o
"tensorflow::TensorShape::dim_size(int) const", referenced from:
tensorflow::Tensor::dim_size(int) const in roi_pooling_op-db8872.o
"Eigen::GpuDevice const& tensorflow::OpKernelContext::eigen_deviceEigen::GpuDevice() const", referenced from:
RoiPoolingKernel(tensorflow::OpKernelContext*, tensorflow::Tensor const*, tensorflow::Tensor const*, float, int, int, int, int, int, int, tensorflow::TensorShape const&) in roi_pooling_op-db8872.o
RoiPoolingGradKernel(tensorflow::OpKernelContext*, tensorflow::Tensor const*, tensorflow::Tensor const*, tensorflow::Tensor const*, tensorflow::Tensor const*, float, int, int, int, int, int, int, int, tensorflow::TensorShape const&) in roi_pooling_op-db8872.o
"tensorflow::Tensor::CheckTypeAndIsAligned(tensorflow::DataType) const", referenced from:
tensorflow::TTypes<float, 1ul, long>::ConstTensor tensorflow::Tensor::shaped<float, 1ul>(tensorflow::gtl::ArraySlice) const in roi_pooling_op-db8872.o
tensorflow::TTypes<float, 1ul, long>::Tensor tensorflow::Tensor::shaped<float, 1ul>(tensorflow::gtl::ArraySlice) in roi_pooling_op-db8872.o
tensorflow::TTypes<int, 1ul, long>::Tensor tensorflow::Tensor::shaped<int, 1ul>(tensorflow::gtl::ArraySlice) in roi_pooling_op-db8872.o
tensorflow::TTypes<double, 1ul, long>::ConstTensor tensorflow::Tensor::shaped<double, 1ul>(tensorflow::gtl::ArraySlice) const in roi_pooling_op-db8872.o
tensorflow::TTypes<double, 1ul, long>::Tensor tensorflow::Tensor::shaped<double, 1ul>(tensorflow::gtl::ArraySlice) in roi_pooling_op-db8872.o
tensorflow::TTypes<int, 1ul, long>::ConstTensor tensorflow::Tensor::shaped<int, 1ul>(tensorflow::gtl::ArraySlice) const in roi_pooling_op-db8872.o
"typeinfo for tensorflow::OpKernel", referenced from:
typeinfo for RoiPoolOp<Eigen::ThreadPoolDevice, float> in roi_pooling_op-db8872.o
typeinfo for RoiPoolOp<Eigen::ThreadPoolDevice, double> in roi_pooling_op-db8872.o
typeinfo for RoiPoolOp<Eigen::GpuDevice, float> in roi_pooling_op-db8872.o
typeinfo for RoiPoolGradOp<Eigen::GpuDevice, float> in roi_pooling_op-db8872.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)

Seems to me cython created so is having problem linking up.
any help? thanks.

[pchankh]

Can we have an understanding what versions / requirements of each modules you are using for this build?

[eisneim]

i solved make error with these steps on my Mac Sierra

1. make sure cuda is in correct path, setup.py assumes cuda lib in '/usr/local/cuda/lib64', in my case, i put cuda lib in /usr/local/cuda/lib so i need to create a symbolic link use "ln -s /usr/local/cuda/lib /usr/local/cuda/lib64"

2. if you use python3 with tensorflow you need to install tensorflow for python2

3. if you encountered "error: no matching function for call to '_nms'"
   you need to manually change "nms/gpu_nms.cpp" file that's generated by cython.
   you need to cast long* to int* by adding "(int*)" to first argument like this:
   _nms((int*)(&(*_Pyx_BufPtrStrided1d( .......... (rest of code)........

4. if you encountered ld: symbol(s) not found for architecture x86_64 or nvcc fatal : Unknown option 'undefined'
   in lib/make.sh change nvcc compiler flags, remove $CXXFLAGS like this:

nvcc -std=c++11 -c -o roi_pooling_op.cu.o roi_pooling_op_gpu.cu.cc \
		-I $TF_INC -D GOOGLE_CUDA=1 -x cu -Xcompiler -fPIC \
		-arch=sm_37

hope this will help

[CharlesShang]

@eisneim Thank you for your comments.