{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":344328365,"defaultBranch":"development","name":"VIRUS-MVP","ownerLogin":"cidgoh","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-03-04T02:42:45.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/83980385?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1718409541.0","currentOid":""},"activityList":{"items":[{"before":"320d9e2d525ea69d6394d27825a6765bcd18bf34","after":"6bf2a75de5531d1aea286fcaf15d981b2e0f8b71","ref":"refs/heads/issue_205","pushedAt":"2024-06-15T00:21:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Stub filter btn\n\n* Temporary removal of clade defining switch","shortMessageHtmlLink":"Stub filter btn"}},{"before":null,"after":"320d9e2d525ea69d6394d27825a6765bcd18bf34","ref":"refs/heads/issue_205","pushedAt":"2024-06-14T23:59:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Global var of unique pokay fns","shortMessageHtmlLink":"Global var of unique pokay fns"}},{"before":"96b50a6a007cac628ed38465cf45a271bd4a8e3a","after":null,"ref":"refs/heads/issue_177","pushedAt":"2024-06-14T21:45:26.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"}},{"before":"96de6007bf25722acfdda45796dba5b5f9725090","after":"a9e6acf1882f093bc95f37cf71eb67bc49a2d1cf","ref":"refs/heads/development","pushedAt":"2024-06-14T21:45:23.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Change select groups modal loading behaviour (#208)\n\n* Update select groups modal body every data update\r\n\r\n* Regardless of whether modal is open or not\r\n\r\n* Stop updating whenever modal is opened\r\n\r\n* Rollback jQuery UI for faster sortable calls\r\n\r\n* Also remove stale TODO","shortMessageHtmlLink":"Change select groups modal loading behaviour (#208)"}},{"before":"5f2ad346b8edba4662446e02022af6f493a42fc8","after":"96b50a6a007cac628ed38465cf45a271bd4a8e3a","ref":"refs/heads/issue_177","pushedAt":"2024-06-14T21:42:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Rollback jQuery UI for faster sortable calls\n\n* Also remove stale TODO","shortMessageHtmlLink":"Rollback jQuery UI for faster sortable calls"}},{"before":"1deb3bfda2d56614b36324a6b31ab508d0f9bf93","after":null,"ref":"refs/heads/issue_209","pushedAt":"2024-06-13T20:11:37.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"}},{"before":"7ea79c52d9e396f06174848b848850f7dae2b65e","after":"96de6007bf25722acfdda45796dba5b5f9725090","ref":"refs/heads/development","pushedAt":"2024-06-13T20:11:34.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Stop hidden strains from defaulting when `[]` (#210)","shortMessageHtmlLink":"Stop hidden strains from defaulting when [] (#210)"}},{"before":null,"after":"1deb3bfda2d56614b36324a6b31ab508d0f9bf93","ref":"refs/heads/issue_209","pushedAt":"2024-06-13T20:10:22.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Stop hidden strains from defaulting when `[]`","shortMessageHtmlLink":"Stop hidden strains from defaulting when []"}},{"before":null,"after":"5f2ad346b8edba4662446e02022af6f493a42fc8","ref":"refs/heads/issue_177","pushedAt":"2024-06-12T17:31:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Update select groups modal body every data update\n\n* Regardless of whether modal is open or not\n\n* Stop updating whenever modal is opened","shortMessageHtmlLink":"Update select groups modal body every data update"}},{"before":"465266f530c05382623a196e61a818eb331bc907","after":null,"ref":"refs/heads/minimalist_docker_image","pushedAt":"2024-06-11T21:13:05.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"}},{"before":"60592046625e9b0cc37d5ce3a2cd5899915af283","after":"7ea79c52d9e396f06174848b848850f7dae2b65e","ref":"refs/heads/development","pushedAt":"2024-06-11T21:13:02.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Improved docker image (#206)\n\n* wip\r\n\r\n* wip\r\n\r\n* Run nextflow using docker\r\n\r\n* Remove use of conda in calls to nf-ncov-voc\r\n\r\n* Install docker in containers\r\n\r\n* Map docker socket from host to avoid docker-in-docker\r\n\r\n* Replace use of conda with venv in docker image\r\n\r\n* Use conda base image with python base image\r\n\r\n* Mount exact path to nf-ncov-voc, as required when running nextflow\r\n in docker\r\n\r\n* Update nf-ncov-voc submodule\r\n\r\n* Remove stale conda env yml\r\n\r\n* Update README\r\n\r\n* Update README","shortMessageHtmlLink":"Improved docker image (#206)"}},{"before":"e8ee4dda038e304a0fcb8a30f95dabd6c73e86c0","after":"465266f530c05382623a196e61a818eb331bc907","ref":"refs/heads/minimalist_docker_image","pushedAt":"2024-06-11T21:11:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Update README","shortMessageHtmlLink":"Update README"}},{"before":"76bf512beeff23a133389347765bc1d2e8b1747c","after":"e8ee4dda038e304a0fcb8a30f95dabd6c73e86c0","ref":"refs/heads/minimalist_docker_image","pushedAt":"2024-06-11T19:02:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Update README","shortMessageHtmlLink":"Update README"}},{"before":"09a5a6bcf68b34d5e023c169249cb33a954cb9eb","after":"76bf512beeff23a133389347765bc1d2e8b1747c","ref":"refs/heads/minimalist_docker_image","pushedAt":"2024-06-11T17:39:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Remove stale conda env yml","shortMessageHtmlLink":"Remove stale conda env yml"}},{"before":"f1351959619ad5ec2c0352f656dd316eef265719","after":"09a5a6bcf68b34d5e023c169249cb33a954cb9eb","ref":"refs/heads/minimalist_docker_image","pushedAt":"2024-06-06T20:45:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Run nextflow using docker\n\n* Remove use of conda in calls to nf-ncov-voc\n\n* Install docker in containers\n\n* Map docker socket from host to avoid docker-in-docker\n\n* Replace use of conda with venv in docker image\n\n* Use conda base image with python base image\n\n* Mount exact path to nf-ncov-voc, as required when running nextflow\n in docker\n\n* Update nf-ncov-voc submodule","shortMessageHtmlLink":"Run nextflow using docker"}},{"before":"84f3254964e882dff0d45b8bcf6950d4c67e31f0","after":"f1351959619ad5ec2c0352f656dd316eef265719","ref":"refs/heads/minimalist_docker_image","pushedAt":"2024-05-10T21:41:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"wip","shortMessageHtmlLink":"wip"}},{"before":null,"after":"84f3254964e882dff0d45b8bcf6950d4c67e31f0","ref":"refs/heads/minimalist_docker_image","pushedAt":"2024-05-10T21:35:02.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"wip","shortMessageHtmlLink":"wip"}},{"before":"8b08ef90abe28e3aa0c37076ff5854f91e26dabd","after":"eb0cc6ce2edf401abc72f3c34926f79633a31c7e","ref":"refs/heads/singularity_branch","pushedAt":"2024-05-08T18:51:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"wip","shortMessageHtmlLink":"wip"}},{"before":null,"after":"8b08ef90abe28e3aa0c37076ff5854f91e26dabd","ref":"refs/heads/singularity_branch","pushedAt":"2024-05-07T18:09:51.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Simplify docker image\n\n* nextflow exec no longer moved to root\n\n* Only copy essential files to image","shortMessageHtmlLink":"Simplify docker image"}},{"before":"994166355d4b027a57f0f4778f3d904e7e143948","after":"659db850dee506d2a547d28f9547331a908b2760","ref":"refs/heads/master","pushedAt":"2024-05-01T21:40:49.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Merge branch 'development'","shortMessageHtmlLink":"Merge branch 'development'"}},{"before":"2326414fcc9fd59f5aa66abaeae70c1a04f8b34e","after":"9d4ee1726d4ffa92e81d5a0c89e833d3dd131308","ref":"refs/heads/no_upload_master","pushedAt":"2024-05-01T21:40:16.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Merge branch 'development' into no_upload_master","shortMessageHtmlLink":"Merge branch 'development' into no_upload_master"}},{"before":"d2002ed9cef4401fd31c54df0ee172ae9ef82914","after":null,"ref":"refs/heads/new_gvf_files","pushedAt":"2024-05-01T20:37:36.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"}},{"before":"4218fba67ffb38116a46570c6439a67fa2f5e680","after":"60592046625e9b0cc37d5ce3a2cd5899915af283","ref":"refs/heads/development","pushedAt":"2024-05-01T20:37:33.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Process new gvf format (#195)\n\n* Stub ref dataset\r\n\r\n* Process new gvf files\r\n\r\n* New functions focused on single gvf file replace fns focused on dirs\r\n\r\n* Rename sample group name parsing fn\r\n\r\n* Allow user uploads for new nf-ncov-voc submodule\r\n\r\n* Update README\r\n\r\n* Update README\r\n\r\n* Update nf-ncov-voc","shortMessageHtmlLink":"Process new gvf format (#195)"}},{"before":"7dbe4a21fbe9c1cb0a330013a1b6f18240d341e3","after":"d2002ed9cef4401fd31c54df0ee172ae9ef82914","ref":"refs/heads/new_gvf_files","pushedAt":"2024-05-01T20:36:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Update nf-ncov-voc","shortMessageHtmlLink":"Update nf-ncov-voc"}},{"before":"0fbd95ee60d95a7a388f0d2eeea31266b5f34d8e","after":null,"ref":"refs/heads/interface_vocabulary","pushedAt":"2024-04-30T19:57:31.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"}},{"before":"25e3a81c79a18c1f8d58f02b5baaf42195899567","after":"4218fba67ffb38116a46570c6439a67fa2f5e680","ref":"refs/heads/development","pushedAt":"2024-04-30T19:57:28.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Generalize refs to lineages in interface (#199)\n\n* Also replace one ref to strains with lineages","shortMessageHtmlLink":"Generalize refs to lineages in interface (#199)"}},{"before":null,"after":"0fbd95ee60d95a7a388f0d2eeea31266b5f34d8e","ref":"refs/heads/interface_vocabulary","pushedAt":"2024-04-30T19:55:22.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Generalize refs to lineages in interface\n\n* Also replace one ref to strains with lineages","shortMessageHtmlLink":"Generalize refs to lineages in interface"}},{"before":"2a988e7c6e18de3a0d536c95c922ebed1b545c29","after":"7dbe4a21fbe9c1cb0a330013a1b6f18240d341e3","ref":"refs/heads/new_gvf_files","pushedAt":"2024-04-29T21:36:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Update README","shortMessageHtmlLink":"Update README"}},{"before":"7577a8983e69a1629f43cfdeb62a8f9b48c59dc8","after":"2a988e7c6e18de3a0d536c95c922ebed1b545c29","ref":"refs/heads/new_gvf_files","pushedAt":"2024-04-29T21:34:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Update README","shortMessageHtmlLink":"Update README"}},{"before":"3ea0ba1791027abbd7e094d99d3a1db11cd6309f","after":"7577a8983e69a1629f43cfdeb62a8f9b48c59dc8","ref":"refs/heads/new_gvf_files","pushedAt":"2024-04-29T18:41:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivansg44","name":null,"path":"/ivansg44","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34198261?s=80&v=4"},"commit":{"message":"Allow user uploads for new nf-ncov-voc submodule","shortMessageHtmlLink":"Allow user uploads for new nf-ncov-voc submodule"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEZe1agAA","startCursor":null,"endCursor":null}},"title":"Activity ยท cidgoh/VIRUS-MVP"}