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Is your feature request related to a problem? Please describe.
Sheep and Goat projects have SNPs coordinates for the four major assemblies I need (CHI1, ARS, OAR3, OAR4)
Describe the solution you'd like
Check genomic coordinates, make a report and then fill those data into database
Describe alternatives you've considered
Data could be fetched directly from EBI or EnsEMBL, however it's interesting to merge multiple data sources to understand where problems could be. Data from consortium will not be used to provide the final data files, evaluate if these information need to be provided with final version
Additional context
Those data could be useful to cover missing informations (like rs in goat). This data lacks of alignment information, so getting illumina_top from this type of data make no sense.
Manage the two different data files provided by consortium
Force data update when importing from consortium
Track date when importing from consortium
Determine illumina_top data directly from variant for Sheep
Import data for goat
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
Sheep and Goat projects have SNPs coordinates for the four major assemblies I need (CHI1, ARS, OAR3, OAR4)
Describe the solution you'd like
Check genomic coordinates, make a report and then fill those data into database
Describe alternatives you've considered
Data could be fetched directly from EBI or EnsEMBL, however it's interesting to merge multiple data sources to understand where problems could be. Data from consortium will not be used to provide the final data files, evaluate if these information need to be provided with final version
Additional context
Those data could be useful to cover missing informations (like rs in goat). This data lacks of alignment information, so getting
illumina_top
from this type of data make no sense.illumina_top
data directly from variant for SheepThe text was updated successfully, but these errors were encountered: