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run_cicero multicore #70

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skilpinen opened this issue Dec 17, 2020 · 1 comment
Open

run_cicero multicore #70

skilpinen opened this issue Dec 17, 2020 · 1 comment

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@skilpinen
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I am exploring is there any way to run cicero faster, and noticed that within the code there is call to parallel::mclapply() but with hardcoded to mc.cores=1. Without reading through the entire logic there, just thought as that is here any possibility to run it faster?

@hpliner
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hpliner commented Dec 28, 2020

Hello, As I recall, I ran into inconsistent crashes when running with multicore which is why I ultimately hard coded it to 1. This was several years ago, so it's possible that glasso has been modified to be thread safe. I don't have time currently to try again on this, but if you'd like to give it a try and submit a pull request I'd be happy to review it.

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