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maybe the "path" do not exist in the gfa ? #1413

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peanut-nu opened this issue Jun 13, 2024 · 0 comments
Closed

maybe the "path" do not exist in the gfa ? #1413

peanut-nu opened this issue Jun 13, 2024 · 0 comments

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@peanut-nu
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peanut-nu commented Jun 13, 2024

hello , i do the Minigraph-Cactus successfully and get the file of gfa ,but when i want to use the "pangenome-growth" to get picture,
do this :grep '^P' hprc-v1.0-mc-grch38.gfa | cut -f2 | grep -ie 'grch38' > hprc-v1.0-mc-grch38.paths.grch38.txt.
my code grep '^P' pangenome.gfa.gz | cut -f2 | grep -ie 'che' > paths.txt

  • and i my result is zero
  • i found it maybe the file of gfa is not exit the "path"?
    -can you help me ?thank you so much!!!
    my file like this屏幕截图 2024-06-13 171348
    the example like this
    image
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