snATAC data does not have a $Harmony dimension reduced matrix

[liyang24]

Hi!
I noticed that I needed to use $Harmony in the tutorial to prepare the data

#add dimension reduced matrix
harmony_matDR <- proj@reducedDims$Harmony$matDR

but I only had $UMAP in my data ,because my samples are not duplicated.
In this case, can I still use this tutorial? How can I get the final obj.atac?

[lzj1769]

Sure, you can use the UMAP embedding.