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So, it seems like using conda in cygwin or mingw is still an open issue: conda/conda#747
I'm just going to recommend point and click downloads, unzips, etc for windows. Or I could explicitly say you have to use two shells: cmd.exe for python and cygwin/mingw for unix commands.
Maybe recommend installing mingw or cygwin first.
And check to what extent the linux instructions work with that.
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