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.gitignore
Makefile
README.txt
TODO
bigsplitread.py
make-random-genome.py
make-reads.py
mapreads-nb.ipynb
mapreads.py
surely.py
test_surely.py

README.txt

You'll need bowtie v1,

       http://bowtie-bio.sourceforge.net/index.shtml

to run this.  bowtie 0.12.7 is the latest release of bowtie 1, and will work.

You will also need screed v0.7, latest from

       http://github.com/ctb/screed/

installed in your PYTHONPATH.

CTB 3/2012