Failure to set up the local environment by running environment_checklist.sh

[flyingcat047]

Below is the error message that I got when I tried to set up the local envrionment by running environment_checklist.sh. Some of the dependency failed to be installed.

(py36) * xuebin.wang$ sh environment_checklist.sh 

Run the checklist...

environment_checklist.sh: line 6: yum: command not found

1. check development env...

environment_checklist.sh: line 11: yum: command not found

environment_checklist.sh: line 12: yum: command not found

Development env checking finished.

2. check python 3.6 env...

environment_checklist.sh: line 20: yum: command not found

Python 3.6 checking finished.

3. check paillier packages...

environment_checklist.sh: line 28: yum: command not found

Collecting gmpy2

  Using cached gmpy2-2.0.8.zip (280 kB)

Collecting phe

  Using cached phe-1.4.0.tar.gz (35 kB)

Building wheels for collected packages: gmpy2, phe

  Building wheel for gmpy2 (setup.py) ... error

  ERROR: Command errored out with exit status 1:

   command: /Users/xuebin.wang/opt/anaconda3/envs/py36/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-install-tus8ysrk/gmpy2_804b98d559b94d669dd65ed828081209/setup.py'"'"'; __file__='"'"'/private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-install-tus8ysrk/gmpy2_804b98d559b94d669dd65ed828081209/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-wheel-qxmh5v9h

       cwd: /private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-install-tus8ysrk/gmpy2_804b98d559b94d669dd65ed828081209/

  Complete output (14 lines):

  running bdist_wheel

  running build

  running build_ext

  building 'gmpy2' extension

  creating build

  creating build/temp.macosx-10.9-x86_64-3.6

  creating build/temp.macosx-10.9-x86_64-3.6/src

  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/xuebin.wang/opt/anaconda3/envs/py36/include -arch x86_64 -I/Users/xuebin.wang/opt/anaconda3/envs/py36/include -arch x86_64 -DWITHMPFR -DWITHMPC -I/Users/xuebin.wang/opt/anaconda3/envs/py36/include/python3.6m -c src/gmpy2.c -o build/temp.macosx-10.9-x86_64-3.6/src/gmpy2.o

  In file included from src/gmpy2.c:426:

  src/gmpy.h:106:12: fatal error: 'gmp.h' file not found

  #  include "gmp.h"

             ^~~~~~~

  1 error generated.

  error: command 'gcc' failed with exit status 1

  ----------------------------------------

  ERROR: Failed building wheel for gmpy2

  Running setup.py clean for gmpy2

  Building wheel for phe (setup.py) ... done

  Created wheel for phe: filename=phe-1.4.0-py2.py3-none-any.whl size=37362 sha256=1b08747fb6775a103f53ac225fefc0e13206acabbdeeff65bd15bec56a809975

  Stored in directory: /Users/xuebin.wang/Library/Caches/pip/wheels/61/2c/64/036a5dd340f2608a6d3c7cb8e88333a841d7ad3457ca9fd7f9

Successfully built phe

Failed to build gmpy2

Installing collected packages: phe, gmpy2

    Running setup.py install for gmpy2 ... error

    ERROR: Command errored out with exit status 1:

     command: /Users/xuebin.wang/opt/anaconda3/envs/py36/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-install-tus8ysrk/gmpy2_804b98d559b94d669dd65ed828081209/setup.py'"'"'; __file__='"'"'/private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-install-tus8ysrk/gmpy2_804b98d559b94d669dd65ed828081209/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-record-o053dhrt/install-record.txt --single-version-externally-managed --compile --install-headers /Users/xuebin.wang/opt/anaconda3/envs/py36/include/python3.6m/gmpy2

         cwd: /private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-install-tus8ysrk/gmpy2_804b98d559b94d669dd65ed828081209/

    Complete output (14 lines):

    running install

    running build

    running build_ext

    building 'gmpy2' extension

    creating build

    creating build/temp.macosx-10.9-x86_64-3.6

    creating build/temp.macosx-10.9-x86_64-3.6/src

    gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/xuebin.wang/opt/anaconda3/envs/py36/include -arch x86_64 -I/Users/xuebin.wang/opt/anaconda3/envs/py36/include -arch x86_64 -DWITHMPFR -DWITHMPC -I/Users/xuebin.wang/opt/anaconda3/envs/py36/include/python3.6m -c src/gmpy2.c -o build/temp.macosx-10.9-x86_64-3.6/src/gmpy2.o

    In file included from src/gmpy2.c:426:

    src/gmpy.h:106:12: fatal error: 'gmp.h' file not found

    ```#  include "gmp.h"```

               ^~~~~~~

    1 error generated.

    error: command 'gcc' failed with exit status 1

    ----------------------------------------

ERROR: Command errored out with exit status 1: /Users/xuebin.wang/opt/anaconda3/envs/py36/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-install-tus8ysrk/gmpy2_804b98d559b94d669dd65ed828081209/setup.py'"'"'; __file__='"'"'/private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-install-tus8ysrk/gmpy2_804b98d559b94d669dd65ed828081209/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/v6/bhhlhsqs21x3rlqfctn9tbr80000gp/T/pip-record-o053dhrt/install-record.txt --single-version-externally-managed --compile --install-headers /Users/xuebin.wang/opt/anaconda3/envs/py36/include/python3.6m/gmpy2 Check the logs for full command output.

Paillier packages checking finished.

4. check numpy/scipy related...

Collecting intel-numpy

  Downloading intel_numpy-1.15.1-cp36-cp36m-macosx_10_12_intel.macosx_10_12_x86_64.whl (6.0 MB)

     |████████████████████████████████| 6.0 MB 3.3 MB/s 

Collecting intel-scipy

  Downloading intel_scipy-1.1.0-cp36-cp36m-macosx_10_12_intel.macosx_10_12_x86_64.whl (28.2 MB)

     |████████████████████████████████| 28.2 MB 18.4 MB/s 

Collecting icc-rt

  Downloading icc_rt-2019.0-py2.py3-none-macosx_10_12_intel.macosx_10_12_x86_64.whl (9.5 MB)

     |████████████████████████████████| 9.5 MB 34.1 MB/s 

Collecting mkl-fft

  Downloading mkl_fft-1.0.6-cp36-cp36m-macosx_10_12_intel.macosx_10_12_x86_64.whl (232 kB)

     |████████████████████████████████| 232 kB 29.0 MB/s 

Collecting mkl

  Downloading mkl-2019.0-py2.py3-none-macosx_10_12_intel.macosx_10_12_x86_64.whl (193.8 MB)

     |████████████████████████████████| 193.8 MB 28.7 MB/s 

Collecting tbb4py

  Downloading tbb4py-2019.0-cp36-cp36m-macosx_10_12_intel.macosx_10_12_x86_64.whl (47 kB)

     |████████████████████████████████| 47 kB 13.7 MB/s 

Collecting mkl-random

  Downloading mkl_random-1.0.1.1-cp36-cp36m-macosx_10_12_intel.macosx_10_12_x86_64.whl (393 kB)

     |████████████████████████████████| 393 kB 43.2 MB/s 

Collecting intel-openmp

  Downloading intel_openmp-2019.0-py2.py3-none-macosx_10_12_intel.macosx_10_12_x86_64.whl (1.1 MB)

     |████████████████████████████████| 1.1 MB 22.5 MB/s 

Collecting tbb==2019.*

  Downloading tbb-2019.0-py2.py3-none-macosx_10_12_intel.macosx_10_12_x86_64.whl (565 kB)

     |████████████████████████████████| 565 kB 21.6 MB/s 

Installing collected packages: tbb, intel-openmp, tbb4py, mkl-random, mkl-fft, mkl, icc-rt, intel-numpy, intel-scipy

Successfully installed icc-rt-2019.0 intel-numpy-1.15.1 intel-openmp-2019.0 intel-scipy-1.1.0 mkl-2019.0 mkl-fft-1.0.6 mkl-random-1.0.1.1 tbb-2019.0 tbb4py-2019.0

Collecting grpcio

  Downloading grpcio-1.39.0-cp36-cp36m-macosx_10_10_x86_64.whl (3.9 MB)

     |████████████████████████████████| 3.9 MB 4.0 MB/s 

Collecting grpcio-tools

  Downloading grpcio_tools-1.39.0-cp36-cp36m-macosx_10_10_x86_64.whl (2.0 MB)

     |████████████████████████████████| 2.0 MB 19.1 MB/s 

Collecting six>=1.5.2

  Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)

Requirement already satisfied: setuptools in /Users/xuebin.wang/opt/anaconda3/envs/py36/lib/python3.6/site-packages (from grpcio-tools) (52.0.0.post20210125)

Collecting protobuf<4.0dev,>=3.5.0.post1

  Downloading protobuf-3.17.3-cp36-cp36m-macosx_10_9_x86_64.whl (1.0 MB)

     |████████████████████████████████| 1.0 MB 25.4 MB/s 

Installing collected packages: six, protobuf, grpcio, grpcio-tools

Successfully installed grpcio-1.39.0 grpcio-tools-1.39.0 protobuf-3.17.3 six-1.16.0

[guabao]

Greetings,

It seems that you actually have two failures in your code snippet.

The first one is that there are several failures on yum. Unfortunately, the environment_checklist.sh is written in CentOS system. An automated checking and installing script will be updated in the near future. For now I would suggest install anaconda environment: https://www.anaconda.com/products/individual as a shortcut for environment setup. After installing anaconda, you can create a python 3.6/3.7 environment and install the following packages:

conda install -c anaconda gmp
conda install -c conda-forge mpfr
conda install -c anaconda mpc

Then you should be good to run the code.

Let me know if you still have questions on this issue.

[flyingcat047]

Thank you for your response. I tried with your new updates. It works fine on my side.