BUG: pybind for example bulkTopologicalCriterion

bulktopoC.py

@@ -0,0 +1,48 @@
+import bbdir.cyoda as cyoda
+trajectory ="subprojects/seams-core/input/traj/cluster-417.lammpstrj"
+
+#Get the frame
+resCloud = cyoda.readLammpsTrjreduced(
+          filename = trajectory,
+          targetFrame = 1302,
+          typeI = 1, #oxygenAtomType
+          isSlice = False,
+          coordLow = [0,0,0],
+          coordHigh = [0,0,0],
+)
+
+#Calculate the neighborlist by ID
+nList = cyoda.neighListO(
+    rcutoff = 3.5,
+    yCloud = resCloud,
+    typeI = 1, #oxygenAtomType
+)
+solCloud = cyoda.PointCloudDouble()
+iceList = []
+clump = cyoda.clusterAnalysis(
+        path = "runOne/", #outDir 
+        iceCloud = solCloud,
+        yCloud = resCloud,
+        nList = nList,
+        iceNeighbourList = iceList,
+        cutoff = 3.5,
+        firstFrame = 1302,
+        bopAnalysis = "q6",
+)
+
+#Gets every ring (non-primitives included)
+rings = cyoda.ringNetwork(
+    nList = iceList,
+    maxDepth = 6,
+)
+
+#Finds DDCs and HCs
+tum3 = cyoda.topoUnitMatchingBulk(
+    path = "runOne/", #outDir
+    rings = rings,
+    iceNeighbourList = iceList,
+    yCloud = solCloud,
+    firstFrame = 1302,
+    printClusters = True,
+    onlyTetrahedral = False,
+)