Update env var name in object store init job #612
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A similar issue impacted the init db job. Would show up on k8s, as the default database server is the docker compose container name |
wilko77
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Feb 22, 2021
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* catching NoSuchBucket exception at cleanup (#576) * fix NoSuchBucket error (#577) * use the same helper function as the other tests * more logging on server side * we need read access to check if bucket exists * creating bucket if it does not exist * Bump marshmallow from 3.6.0 to 3.6.1 in /base Bumps [marshmallow](https://github.com/marshmallow-code/marshmallow) from 3.6.0 to 3.6.1. - [Release notes](https://github.com/marshmallow-code/marshmallow/releases) - [Changelog](https://github.com/marshmallow-code/marshmallow/blob/dev/CHANGELOG.rst) - [Commits](marshmallow-code/marshmallow@3.6.0...3.6.1) Signed-off-by: dependabot-preview[bot] <support@dependabot.com> * Bump pytest from 5.3.5 to 5.4.3 in /base Bumps [pytest](https://github.com/pytest-dev/pytest) from 5.3.5 to 5.4.3. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/master/CHANGELOG.rst) - [Commits](pytest-dev/pytest@5.3.5...5.4.3) Signed-off-by: dependabot-preview[bot] <support@dependabot.com> * Bump anonlink-client from 0.1.2 to 0.1.3 in /base Bumps [anonlink-client](https://github.com/data61/anonlink-client) from 0.1.2 to 0.1.3. - [Release notes](https://github.com/data61/anonlink-client/releases) - [Changelog](https://github.com/data61/anonlink-client/blob/master/CHANGELOG.md) - [Commits](https://github.com/data61/anonlink-client/commits) Signed-off-by: dependabot-preview[bot] <support@dependabot.com> * update python3 version (#582) * update python3 version * update anonlink-client, as old version was broken * that overwrites the version from base for no good reason. * Bump ijson from 3.0.4 to 3.1.1 in /base Bumps [ijson](https://github.com/ICRAR/ijson) from 3.0.4 to 3.1.1. - [Release notes](https://github.com/ICRAR/ijson/releases) - [Changelog](https://github.com/ICRAR/ijson/blob/master/CHANGELOG.md) - [Commits](ICRAR/ijson@v3.0.4...v3.1.1) Signed-off-by: dependabot-preview[bot] <support@dependabot.com> * Bump celery from 4.4.2 to 4.4.7 in /base Bumps [celery](https://github.com/celery/celery) from 4.4.2 to 4.4.7. - [Release notes](https://github.com/celery/celery/releases) - [Changelog](https://github.com/celery/celery/blob/master/Changelog.rst) - [Commits](celery/celery@4.4.2...v4.4.7) Signed-off-by: dependabot-preview[bot] <support@dependabot.com> * Fix case sensitivity in minio metadata Field names in HTTP headers are case-insensitive, some networks decide that means that can normalize them however they like. Minio's stat.metadata is a dict of custom HTTP headers. This small change ensures that queries will get the header regardless of the case. * Migrate off deprecated K8s dependencies (#596) * Update helm minio chart by several major versions * Migrate off deprecated redis-ha repository * Provide a fallback UPLOAD_OBJECT_STORE_SERVER option as an ingress isn't required for minio to work. * Documents upload object store configuration. * Update azure pipelines * Update base image deps * Pin an older version of bitarray * Update minio image used with docker compose * Bump the chart version * Update ingress to include path Remove defaults from values file for ingress settings Fixed two typos in the templates. * Documents ingress configuration * Updates base and Python dependencies (#601) * Updates base alpine image * Updates python requirements * Use latest release of anonlink and minio * Fix docker build script and benchmark image * Adjusts to a new minio. Noticed that minio has a bug if the assume role duration is less than an hour. * Expose similarities via object store (#594) Sparse similarity results can be extremely large, this commit adds an option for callers to request the object store path of the similarity results instead of the results themselves. * Adds a small test ensuring we can pull similarity scores via object store * Build script now builds the test docker image * Put common environment variables into a .env file for docker-compose * Store credentials with environment variable names to avoid confusion and reduce duplication * The init object store script now creates a readonly user * Updates documentation on uploading and downloading via object store * [minor] Update entity-service chart to use helm api v2 (#606) * Initialize database via alembic * Delete the raw SQL to create the database * Update k8s deployment to use alembic * Update queries to use run_id instead of run for run_results table * Minio python API now requires a "DeleteObject" I don't know why. * Base wasn't building * Bump psycopg2 from 2.8.4 to 2.8.6 in /base (#604) Bumps [psycopg2](https://github.com/psycopg/psycopg2) from 2.8.4 to 2.8.6. - [Release notes](https://github.com/psycopg/psycopg2/releases) - [Changelog](https://github.com/psycopg/psycopg2/blob/master/NEWS) - [Commits](https://github.com/psycopg/psycopg2/commits) Signed-off-by: dependabot-preview[bot] <support@dependabot.com> Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com> Co-authored-by: wilko77 <wilko77@users.noreply.github.com> * Bump alpine from 3.13.1 to 3.13.2 in /base Bumps alpine from 3.13.1 to 3.13.2. Signed-off-by: dependabot-preview[bot] <support@dependabot.com> * Run migration jobs after upgrade as well as after install (#611) * Connect to object store using TLS if configured to (#614) * Update env var names in k8s init jobs (#612) * Update env var name * Update comment in deployment values * Update environment variable used in alembic * Bump iso8601 from 0.1.12 to 0.1.14 in /base Bumps [iso8601](https://github.com/micktwomey/pyiso8601) from 0.1.12 to 0.1.14. - [Release notes](https://github.com/micktwomey/pyiso8601/releases) - [Commits](micktwomey/pyiso8601@0.1.12...0.1.14) Signed-off-by: dependabot-preview[bot] <support@dependabot.com> * bump python3 dependency Alpine 3.13.2 now needs python3=3.8.7-r1 * Adds recommended k8s labels to deployments and services (#616) * Limit the maximum number of candidate pairs (#605) * Cache the number of identified candidates along with the number of comparisons carried out. * Update cache test * Add global limits on number of edges * Handle the case where there are no cached edges * Add a step in the integration test pipeline validating if a test result file exists, otherwise fails. (#618) * Add optional pod annotations to init jobs (#619) * Adds changelog/release notes for v1.14.0 (#620) * Proposed changelog for v1.14.0 * Update azure-pipelines.yml to fix a name change in a previous PR... Co-authored-by: wilko77 <wilko77@users.noreply.github.com> * Bump pytest-xdist from 1.29.0 to 2.2.1 in /base Bumps [pytest-xdist](https://github.com/pytest-dev/pytest-xdist) from 1.29.0 to 2.2.1. - [Release notes](https://github.com/pytest-dev/pytest-xdist/releases) - [Changelog](https://github.com/pytest-dev/pytest-xdist/blob/master/CHANGELOG.rst) - [Commits](pytest-dev/pytest-xdist@v1.29.0...v2.2.1) Signed-off-by: dependabot-preview[bot] <support@dependabot.com> * bump version number * more bumping... Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com> Co-authored-by: Brian Thorne <brian@hardbyte.nz> Co-authored-by: Brian Thorne <brian@thorne.link> Co-authored-by: Guillaume Smith <gusmith@users.noreply.github.com>
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Fix for data61/charts#1 (comment)