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Bump psycopg2 from 2.8.4 to 2.8.6 in /base #604

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merged 4 commits into from
Feb 19, 2021

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@dependabot-preview dependabot-preview bot commented Feb 15, 2021

Bumps psycopg2 from 2.8.4 to 2.8.6.

Changelog

Sourced from psycopg2's changelog.

Current release

What's new in psycopg 2.9

  • Dropped support for Python 3.4, 3.5 (:tickets:#1000, #1197).
  • Reclassified SQLSTATE connection exceptions (08XXX) as ~psycopg2.errors.OperationalError (subclass of previously used ~psycopg2.errors.DatabaseError) (:ticket:[#1148](https://github.com/psycopg/psycopg2/issues/1148)).

What's new in psycopg 2.8.6 ^^^^^^^^^^^^^^^^^^^^^^^^^^^

  • Fixed memory leak changing connection encoding to the current one (:ticket:[#1101](https://github.com/psycopg/psycopg2/issues/1101)).
  • Fixed search of mxDateTime headers in virtualenvs (:ticket:[#996](https://github.com/psycopg/psycopg2/issues/996)).
  • Added missing values from errorcodes (:ticket:[#1133](https://github.com/psycopg/psycopg2/issues/1133)).
  • cursor.query reports the query of the last :sql:COPY opearation too (:ticket:[#1141](https://github.com/psycopg/psycopg2/issues/1141)).
  • ~psycopg2.errorcodes map and ~psycopg2.errors classes updated to PostgreSQL 13.
  • Added wheel packages for ARM architecture (:ticket:[#1125](https://github.com/psycopg/psycopg2/issues/1125)).
  • Wheel package compiled against OpenSSL 1.1.1g.

What's new in psycopg 2.8.5 ^^^^^^^^^^^^^^^^^^^^^^^^^^^

  • Fixed use of !connection_factory and !cursor_factory together (:ticket:[#1019](https://github.com/psycopg/psycopg2/issues/1019)).
  • Added support for ~logging.LoggerAdapter in ~psycopg2.extras.LoggingConnection (:ticket:[#1026](https://github.com/psycopg/psycopg2/issues/1026)).
  • ~psycopg2.extensions.Column objects in cursor.description can be sliced (:ticket:[#1034](https://github.com/psycopg/psycopg2/issues/1034)).
  • Added AIX support (:ticket:[#1061](https://github.com/psycopg/psycopg2/issues/1061)).
  • Fixed ~copy.copy() of ~psycopg2.extras.DictCursor rows (:ticket:[#1073](https://github.com/psycopg/psycopg2/issues/1073)).

What's new in psycopg 2.8.4 ^^^^^^^^^^^^^^^^^^^^^^^^^^^

  • Fixed building with Python 3.8 (:ticket:[#854](https://github.com/psycopg/psycopg2/issues/854)).
  • Don't swallow keyboard interrupts on connect when a password is specified in the connection string (:ticket:[#898](https://github.com/psycopg/psycopg2/issues/898)).
  • Don't advance replication cursor when the message wasn't confirmed (:ticket:[#940](https://github.com/psycopg/psycopg2/issues/940)).
  • Fixed inclusion of time.h on linux (:ticket:[#951](https://github.com/psycopg/psycopg2/issues/951)).
  • Fixed int overflow for large values in ~psycopg2.extensions.Column.table_oid

... (truncated)

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@dependabot-preview dependabot-preview bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Feb 15, 2021
Bumps [psycopg2](https://github.com/psycopg/psycopg2) from 2.8.4 to 2.8.6.
- [Release notes](https://github.com/psycopg/psycopg2/releases)
- [Changelog](https://github.com/psycopg/psycopg2/blob/master/NEWS)
- [Commits](https://github.com/psycopg/psycopg2/commits)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
@dependabot-preview dependabot-preview bot force-pushed the dependabot/pip/base/psycopg2-2.8.6 branch from b57fd6a to 578a503 Compare February 16, 2021 03:44
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One of your CI runs failed on this pull request, so Dependabot won't merge it.

Dependabot will still automatically merge this pull request if you amend it and your tests pass.

@wilko77 wilko77 merged commit 663f815 into develop Feb 19, 2021
@wilko77 wilko77 deleted the dependabot/pip/base/psycopg2-2.8.6 branch February 19, 2021 01:54
@hardbyte hardbyte added this to the Entity Service v1.14 milestone Feb 23, 2021
wilko77 added a commit that referenced this pull request Feb 24, 2021
* catching NoSuchBucket exception at cleanup (#576)

* fix NoSuchBucket error (#577)

* use the same helper function as the other tests

* more logging on server side

* we need read access to check if bucket exists

* creating bucket if it does not exist

* Bump marshmallow from 3.6.0 to 3.6.1 in /base

Bumps [marshmallow](https://github.com/marshmallow-code/marshmallow) from 3.6.0 to 3.6.1.
- [Release notes](https://github.com/marshmallow-code/marshmallow/releases)
- [Changelog](https://github.com/marshmallow-code/marshmallow/blob/dev/CHANGELOG.rst)
- [Commits](marshmallow-code/marshmallow@3.6.0...3.6.1)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* Bump pytest from 5.3.5 to 5.4.3 in /base

Bumps [pytest](https://github.com/pytest-dev/pytest) from 5.3.5 to 5.4.3.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@5.3.5...5.4.3)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* Bump anonlink-client from 0.1.2 to 0.1.3 in /base

Bumps [anonlink-client](https://github.com/data61/anonlink-client) from 0.1.2 to 0.1.3.
- [Release notes](https://github.com/data61/anonlink-client/releases)
- [Changelog](https://github.com/data61/anonlink-client/blob/master/CHANGELOG.md)
- [Commits](https://github.com/data61/anonlink-client/commits)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* update python3 version (#582)

* update python3 version

* update anonlink-client, as old version was broken

* that overwrites the version from base for no good reason.

* Bump ijson from 3.0.4 to 3.1.1 in /base

Bumps [ijson](https://github.com/ICRAR/ijson) from 3.0.4 to 3.1.1.
- [Release notes](https://github.com/ICRAR/ijson/releases)
- [Changelog](https://github.com/ICRAR/ijson/blob/master/CHANGELOG.md)
- [Commits](ICRAR/ijson@v3.0.4...v3.1.1)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* Bump celery from 4.4.2 to 4.4.7 in /base

Bumps [celery](https://github.com/celery/celery) from 4.4.2 to 4.4.7.
- [Release notes](https://github.com/celery/celery/releases)
- [Changelog](https://github.com/celery/celery/blob/master/Changelog.rst)
- [Commits](celery/celery@4.4.2...v4.4.7)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* Fix case sensitivity in minio metadata

Field names in HTTP headers are case-insensitive, some networks decide that means that can normalize them however they like.

Minio's stat.metadata is a dict of custom HTTP headers. This
small change ensures that queries will get the header regardless
of the case.

* Migrate off deprecated K8s dependencies (#596)

* Update helm minio chart by several major versions
* Migrate off deprecated redis-ha repository
* Provide a fallback UPLOAD_OBJECT_STORE_SERVER option as an ingress isn't required for minio to work.
* Documents upload object store configuration.
* Update azure pipelines
* Update base image deps
* Pin an older version of bitarray
* Update minio image used with docker compose
* Bump the chart version

* Update ingress to include path
Remove defaults from values file for ingress settings
Fixed two typos in the templates.

* Documents ingress configuration

* Updates base and Python dependencies (#601)

* Updates base alpine image
* Updates python requirements
* Use latest release of anonlink and minio
* Fix docker build script and benchmark image
* Adjusts to a new minio. Noticed that minio has a bug if the assume role duration is less than an hour.

* Expose similarities via object store (#594)

Sparse similarity results can be extremely large, this commit adds an option for callers to request the object store path of the similarity results instead of the results themselves.

* Adds a small test ensuring we can pull similarity scores via object store
* Build script now builds the test docker image
* Put common environment variables into a .env file for docker-compose
* Store credentials with environment variable names to avoid confusion and reduce duplication
* The init object store script now creates a readonly user
* Updates documentation on uploading and downloading via object store

* [minor] Update entity-service chart to use helm api v2 (#606)

* Initialize database via alembic

* Delete the raw SQL to create the database

* Update k8s deployment to use alembic

* Update queries to use run_id instead of run for run_results table

* Minio python API now requires a "DeleteObject"

I don't know why.

* Base wasn't building

* Bump psycopg2 from 2.8.4 to 2.8.6 in /base (#604)

Bumps [psycopg2](https://github.com/psycopg/psycopg2) from 2.8.4 to 2.8.6.
- [Release notes](https://github.com/psycopg/psycopg2/releases)
- [Changelog](https://github.com/psycopg/psycopg2/blob/master/NEWS)
- [Commits](https://github.com/psycopg/psycopg2/commits)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: wilko77 <wilko77@users.noreply.github.com>

* Bump alpine from 3.13.1 to 3.13.2 in /base

Bumps alpine from 3.13.1 to 3.13.2.

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* Run migration jobs after upgrade as well as after install (#611)

* Connect to object store using TLS if configured to (#614)

* Update env var names in k8s init jobs (#612)

* Update env var name
* Update comment in deployment values
* Update environment variable used in alembic

* Bump iso8601 from 0.1.12 to 0.1.14 in /base

Bumps [iso8601](https://github.com/micktwomey/pyiso8601) from 0.1.12 to 0.1.14.
- [Release notes](https://github.com/micktwomey/pyiso8601/releases)
- [Commits](micktwomey/pyiso8601@0.1.12...0.1.14)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* bump python3 dependency

Alpine 3.13.2 now needs python3=3.8.7-r1

* Adds recommended k8s labels to  deployments and services (#616)

* Limit the maximum number of candidate pairs (#605)

* Cache the number of identified candidates along with the number of comparisons carried out.
* Update cache test
* Add global limits on number of edges
* Handle the case where there are no cached edges

* Add a step in the integration test pipeline validating if a test result file exists, otherwise fails. (#618)

* Add optional pod annotations to init jobs (#619)

* Adds changelog/release notes for v1.14.0 (#620)

* Proposed changelog for v1.14.0
* Update azure-pipelines.yml to fix a name change in a previous PR...

Co-authored-by: wilko77 <wilko77@users.noreply.github.com>

* Bump pytest-xdist from 1.29.0 to 2.2.1 in /base

Bumps [pytest-xdist](https://github.com/pytest-dev/pytest-xdist) from 1.29.0 to 2.2.1.
- [Release notes](https://github.com/pytest-dev/pytest-xdist/releases)
- [Changelog](https://github.com/pytest-dev/pytest-xdist/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-xdist@v1.29.0...v2.2.1)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

* bump version number

* more bumping...

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: Brian Thorne <brian@hardbyte.nz>
Co-authored-by: Brian Thorne <brian@thorne.link>
Co-authored-by: Guillaume Smith <gusmith@users.noreply.github.com>
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