Merge pull request #169 from fhalbritter/patch-1

add missing .
databio · Jan 8, 2020 · 216a694 · 216a694
2 parents 885ad39 + b3b96bb
commit 216a694
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pypiper/ngstk.py b/pypiper/ngstk.py
@@ -759,7 +759,7 @@ def count_unique_mapped_reads(self, file_name, paired_end):
 
         if ext == ".sam":
             param = "-S -F4"
-        elif ext == "bam":
+        elif ext == ".bam":
             param = "-F4"
         else:
             raise ValueError("Not a SAM or BAM: '{}'".format(file_name))