Wrong checkpoint for DynUNet

[Edenzzzz]

I ran nesvor segment-stack --input-stacks volumes/case2_day1_stack.nii.gz --output-stack-masks volumes/case2_day1_mask.nii.gz but the downloaded checkpoint (nesvor/preprocessing/masking/brain_segmentation.py) is completely wrong and all keys are unexpected.

[daviddmc]

Hi @Edenzzzz, did you use the docker or install NeSVoR from source? The segmentation model (i.e., MONAIfbs) uses monai v0.3.0. Could you check if your version of monai is too high?

[Edenzzzz]

Thanks for the speedy reply. I installed from source with MONAI 1.2. Switching to V0.3 works fine.