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fiji_log_err.txt
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fiji_log_err.txt
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STARTED TESTING THE 31 MODELS WITH DEEPIMAGEJ IN FIJI AT 2023-08-03 09:50:45.563625
Logs are in D:\a\CI-deepimagej-bioimage-io\CI-deepimagej-bioimage-io\python_CI_scripts\..\test_summaries\fiji_log_out.txt and fiji_log_err.txt
* MODEL 1/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 2/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 3/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 4/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 5/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/C:/Users/RUNNER~1/BLANK_~1/Fiji.app/jars/logback-classic-1.2.3.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 6/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 7/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
java.lang.StringIndexOutOfBoundsException: String index out of range: -1
at java.lang.String.substring(String.java:1967)
at io.bioimage.modelrunner.pytorch.PytorchInterface.loadModel(PytorchInterface.java:126)
at io.bioimage.modelrunner.model.Model.loadModel(Model.java:287)
at deepimagej.DeepImageJ.loadModel(DeepImageJ.java:193)
at deepimagej.tools.ModelLoader.call(ModelLoader.java:117)
at deepimagej.tools.ModelLoader.call(ModelLoader.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 8/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
2023-08-03 09:58:03.904150: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'cudart64_100.dll'; dlerror: cudart64_100.dll not found
2023-08-03 09:58:03.904854: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2023-08-03 09:58:03.984802: I tensorflow/cc/saved_model/reader.cc:31] Reading SavedModel from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 09:58:03.998885: I tensorflow/cc/saved_model/reader.cc:54] Reading meta graph with tags { serve }
2023-08-03 09:58:04.018701: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
2023-08-03 09:58:04.020689: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2023-08-03 09:58:04.020732: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: UNKNOWN ERROR (303)
2023-08-03 09:58:04.022835: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: fv-az623-660
2023-08-03 09:58:04.022938: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: fv-az623-660
2023-08-03 09:58:04.088979: I tensorflow/cc/saved_model/loader.cc:202] Restoring SavedModel bundle.
2023-08-03 09:58:04.321253: I tensorflow/cc/saved_model/loader.cc:311] SavedModel load for tags { serve }; Status: success. Took 336417 microseconds.
java.lang.IllegalArgumentException: No Operation named [denoised] in the Graph
at org.tensorflow.Session$Runner.operationByName(Session.java:384)
at org.tensorflow.Session$Runner.parseOutput(Session.java:393)
at org.tensorflow.Session$Runner.fetch(Session.java:172)
at io.bioimage.modelrunner.tensorflow.v1.Tensorflow1Interface.run(Tensorflow1Interface.java:273)
at io.bioimage.modelrunner.model.Model.runModel(Model.java:325)
at deepimagej.RunnerDL.call(RunnerDL.java:398)
at deepimagej.RunnerDL.call(RunnerDL.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 9/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/C:/Users/RUNNER~1/BLANK_~1/Fiji.app/jars/logback-classic-1.2.3.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 10/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
2023-08-03 09:59:00.553472: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'cudart64_100.dll'; dlerror: cudart64_100.dll not found
2023-08-03 09:59:00.553527: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2023-08-03 09:59:00.629561: I tensorflow/cc/saved_model/reader.cc:31] Reading SavedModel from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 09:59:00.631897: I tensorflow/cc/saved_model/reader.cc:54] Reading meta graph with tags { serve }
2023-08-03 09:59:00.634403: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
2023-08-03 09:59:00.636450: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2023-08-03 09:59:00.636502: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: UNKNOWN ERROR (303)
2023-08-03 09:59:00.638776: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: fv-az623-660
2023-08-03 09:59:00.638877: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: fv-az623-660
2023-08-03 09:59:00.648667: I tensorflow/cc/saved_model/loader.cc:202] Restoring SavedModel bundle.
2023-08-03 09:59:00.694102: I tensorflow/cc/saved_model/loader.cc:311] SavedModel load for tags { serve }; Status: success. Took 64508 microseconds.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 11/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
io.bioimage.modelrunner.exceptions.RunModelException: Error executing the Tensorflow 2 model in a separate process. The process was not terminated correctly.
2023-08-03 10:00:08.498247: W external/org_tensorflow/tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'cudart64_110.dll'; dlerror: cudart64_110.dll not found
2023-08-03 10:00:08.498294: I external/org_tensorflow/tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2023-08-03 10:00:08.812339: I external/org_tensorflow/tensorflow/cc/saved_model/reader.cc:43] Reading SavedModel from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 10:00:08.829779: I external/org_tensorflow/tensorflow/cc/saved_model/reader.cc:107] Reading meta graph with tags { serve }
2023-08-03 10:00:08.829826: I external/org_tensorflow/tensorflow/cc/saved_model/reader.cc:148] Reading SavedModel debug info (if present) from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 10:00:08.831211: I external/org_tensorflow/tensorflow/core/platform/cpu_feature_guard.cc:151] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2023-08-03 10:00:08.833018: W external/org_tensorflow/tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2023-08-03 10:00:08.833066: W external/org_tensorflow/tensorflow/stream_executor/cuda/cuda_driver.cc:269] failed call to cuInit: UNKNOWN ERROR (303)
2023-08-03 10:00:08.836330: I external/org_tensorflow/tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: fv-az623-660
2023-08-03 10:00:08.836432: I external/org_tensorflow/tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: fv-az623-660
2023-08-03 10:00:08.906001: I external/org_tensorflow/tensorflow/cc/saved_model/loader.cc:210] Restoring SavedModel bundle.
2023-08-03 10:00:09.343432: I external/org_tensorflow/tensorflow/cc/saved_model/loader.cc:194] Running initialization op on SavedModel bundle at path: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 10:00:09.422882: I external/org_tensorflow/tensorflow/cc/saved_model/loader.cc:283] SavedModel load for tags { serve }; Status: success: OK. Took 607961 microseconds.
Exception in thread "main" java.lang.IllegalArgumentException: No Operation named [input0] in the Graph
at org.tensorflow.Graph.outputOrThrow(Graph.java:211)
at org.tensorflow.Session$Runner.feed(Session.java:248)
at io.bioimage.modelrunner.tensorflow.v2.api030.Tensorflow2Interface.run(Tensorflow2Interface.java:259)
at io.bioimage.modelrunner.tensorflow.v2.api030.Tensorflow2Interface.main(Tensorflow2Interface.java:480)
at io.bioimage.modelrunner.tensorflow.v2.api030.Tensorflow2Interface.runInterprocessing(Tensorflow2Interface.java:301)
at io.bioimage.modelrunner.tensorflow.v2.api030.Tensorflow2Interface.run(Tensorflow2Interface.java:248)
at io.bioimage.modelrunner.model.Model.runModel(Model.java:325)
at deepimagej.RunnerDL.call(RunnerDL.java:398)
at deepimagej.RunnerDL.call(RunnerDL.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 12/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 13/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 14/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 15/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
[W functional.py:21] Warning: Implicit dimension choice for softmax has been deprecated. Change the call to include dim=X as an argument. (function )
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 16/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 17/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 18/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
2023-08-03 10:13:35.419445: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'cudart64_100.dll'; dlerror: cudart64_100.dll not found
2023-08-03 10:13:35.420163: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2023-08-03 10:13:35.498497: I tensorflow/cc/saved_model/reader.cc:31] Reading SavedModel from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 10:13:35.512360: I tensorflow/cc/saved_model/reader.cc:54] Reading meta graph with tags { serve }
2023-08-03 10:13:35.531785: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
2023-08-03 10:13:35.533767: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2023-08-03 10:13:35.533811: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: UNKNOWN ERROR (303)
2023-08-03 10:13:35.535881: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: fv-az623-660
2023-08-03 10:13:35.535986: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: fv-az623-660
2023-08-03 10:13:35.592268: I tensorflow/cc/saved_model/loader.cc:202] Restoring SavedModel bundle.
2023-08-03 10:13:35.899067: I tensorflow/cc/saved_model/loader.cc:311] SavedModel load for tags { serve }; Status: success. Took 400535 microseconds.
Macro Error: Width or height is 0 in line 25
run ( "Scale..." , "x=- y=- width=&wsize height=&hsize interpolation=Bicubic create" <)> ;
java.lang.NullPointerException
at deepimagej.processing.ProcessingBridge.runProcessingMacro(ProcessingBridge.java:187)
at deepimagej.processing.ProcessingBridge.runPreprocessing(ProcessingBridge.java:77)
at deepimagej.tools.DijRunnerPreprocessing.call(DijRunnerPreprocessing.java:134)
at deepimagej.tools.DijRunnerPreprocessing.call(DijRunnerPreprocessing.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
java.util.concurrent.ExecutionException: java.lang.NullPointerException
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at DeepImageJ_Run.calculateImage(DeepImageJ_Run.java:1046)
at DeepImageJ_Run.arrangeParametersAndRunModel(DeepImageJ_Run.java:736)
at DeepImageJ_Run.run(DeepImageJ_Run.java:300)
at ij.IJ.runUserPlugIn(IJ.java:237)
at ij.IJ.runPlugIn(IJ.java:203)
at ij.Executer.runCommand(Executer.java:152)
at ij.Executer.run(Executer.java:70)
at ij.IJ.run(IJ.java:319)
at ij.IJ.run(IJ.java:409)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.python.core.PyReflectedFunction.__call__(PyReflectedFunction.java:190)
at org.python.core.PyReflectedFunction.__call__(PyReflectedFunction.java:208)
at org.python.core.PyObject.__call__(PyObject.java:494)
at org.python.core.PyObject.__call__(PyObject.java:498)
at org.python.pycode._pyx0.test_one_with_deepimagej$4(D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/fiji_scripts/test_1_with_deepimagej.py:77)
at org.python.pycode._pyx0.call_function(D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/fiji_scripts/test_1_with_deepimagej.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyBaseCode.call(PyBaseCode.java:306)
at org.python.core.PyBaseCode.call(PyBaseCode.java:126)
at org.python.core.PyFunction.__call__(PyFunction.java:416)
at org.python.pycode._pyx0.f$0(D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/fiji_scripts/test_1_with_deepimagej.py:86)
at org.python.pycode._pyx0.call_function(D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/fiji_scripts/test_1_with_deepimagej.py)
at org.python.core.PyTableCode.call(PyTableCode.java:173)
at org.python.core.PyCode.call(PyCode.java:18)
at org.python.core.Py.runCode(Py.java:1687)
at org.python.core.__builtin__.eval(__builtin__.java:497)
at org.python.core.__builtin__.eval(__builtin__.java:501)
at org.python.util.PythonInterpreter.eval(PythonInterpreter.java:255)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:57)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:31)
at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264)
at org.scijava.script.ScriptModule.run(ScriptModule.java:164)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:163)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
Caused by: java.lang.NullPointerException
at deepimagej.tools.DijRunnerPreprocessing.removeProcessedImageAndShowOriginal(DijRunnerPreprocessing.java:206)
at deepimagej.tools.DijRunnerPreprocessing.call(DijRunnerPreprocessing.java:176)
at deepimagej.tools.DijRunnerPreprocessing.call(DijRunnerPreprocessing.java:1)
... 4 more
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 19/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 20/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
2023-08-03 10:16:00.507523: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'cudart64_100.dll'; dlerror: cudart64_100.dll not found
2023-08-03 10:16:00.507575: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2023-08-03 10:16:00.584810: I tensorflow/cc/saved_model/reader.cc:31] Reading SavedModel from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 10:16:00.604418: I tensorflow/cc/saved_model/reader.cc:54] Reading meta graph with tags { serve }
2023-08-03 10:16:00.632471: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
2023-08-03 10:16:00.634399: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2023-08-03 10:16:00.634443: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: UNKNOWN ERROR (303)
2023-08-03 10:16:00.636512: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: fv-az623-660
2023-08-03 10:16:00.636618: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: fv-az623-660
2023-08-03 10:16:00.740979: I tensorflow/cc/saved_model/loader.cc:202] Restoring SavedModel bundle.
2023-08-03 10:16:01.213566: I tensorflow/cc/saved_model/loader.cc:311] SavedModel load for tags { serve }; Status: success. Took 628719 microseconds.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 21/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
2023-08-03 10:17:00.587269: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'cudart64_100.dll'; dlerror: cudart64_100.dll not found
2023-08-03 10:17:00.587369: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2023-08-03 10:17:00.665266: I tensorflow/cc/saved_model/reader.cc:31] Reading SavedModel from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 10:17:00.667539: I tensorflow/cc/saved_model/reader.cc:54] Reading meta graph with tags { serve }
2023-08-03 10:17:00.670080: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
2023-08-03 10:17:00.672222: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2023-08-03 10:17:00.672270: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: UNKNOWN ERROR (303)
2023-08-03 10:17:00.674437: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: fv-az623-660
2023-08-03 10:17:00.674552: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: fv-az623-660
2023-08-03 10:17:00.684218: I tensorflow/cc/saved_model/loader.cc:202] Restoring SavedModel bundle.
2023-08-03 10:17:00.729502: I tensorflow/cc/saved_model/loader.cc:311] SavedModel load for tags { serve }; Status: success. Took 64207 microseconds.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 22/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
2023-08-03 10:18:05.422051: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'cudart64_100.dll'; dlerror: cudart64_100.dll not found
2023-08-03 10:18:05.422103: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2023-08-03 10:18:05.500183: I tensorflow/cc/saved_model/reader.cc:31] Reading SavedModel from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 10:18:05.528793: I tensorflow/cc/saved_model/reader.cc:54] Reading meta graph with tags { serve }
2023-08-03 10:18:05.569795: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
2023-08-03 10:18:05.571977: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2023-08-03 10:18:05.572031: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: UNKNOWN ERROR (303)
2023-08-03 10:18:05.574263: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: fv-az623-660
2023-08-03 10:18:05.574374: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: fv-az623-660
2023-08-03 10:18:05.739215: I tensorflow/cc/saved_model/loader.cc:202] Restoring SavedModel bundle.
2023-08-03 10:18:06.928655: I tensorflow/cc/saved_model/loader.cc:311] SavedModel load for tags { serve }; Status: success. Took 1428436 microseconds.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 23/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
2023-08-03 10:18:45.032539: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'cudart64_100.dll'; dlerror: cudart64_100.dll not found
2023-08-03 10:18:45.032593: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2023-08-03 10:18:45.112208: I tensorflow/cc/saved_model/reader.cc:31] Reading SavedModel from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 10:18:45.140262: I tensorflow/cc/saved_model/reader.cc:54] Reading meta graph with tags { serve }
2023-08-03 10:18:45.183212: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
2023-08-03 10:18:45.185207: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2023-08-03 10:18:45.185258: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: UNKNOWN ERROR (303)
2023-08-03 10:18:45.187394: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: fv-az623-660
2023-08-03 10:18:45.187498: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: fv-az623-660
2023-08-03 10:18:45.346838: I tensorflow/cc/saved_model/loader.cc:202] Restoring SavedModel bundle.
2023-08-03 10:18:45.825653: I tensorflow/cc/saved_model/loader.cc:311] SavedModel load for tags { serve }; Status: success. Took 713408 microseconds.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 24/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 25/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/C:/Users/RUNNER~1/BLANK_~1/Fiji.app/jars/logback-classic-1.2.3.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 26/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 27/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
[W functional.py:21] Warning: Implicit dimension choice for softmax has been deprecated. Change the call to include dim=X as an argument. (function )
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 28/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 29/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
SLF4J: No SLF4J providers were found.
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
SLF4J: Class path contains SLF4J bindings targeting slf4j-api versions 1.7.x or earlier.
SLF4J: Ignoring binding found at [jar:file:/D:/a/CI-deepimagej-bioimage-io/CI-deepimagej-bioimage-io/python_CI_scripts/engines/pytorch-1.13.1-1.13.1-windows-x86_64-cpu-gpu/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See https://www.slf4j.org/codes.html#ignoredBindings for an explanation.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 30/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
* MODEL 31/ 31
** script 1/2: TESTING WITH DEEPIMAGEJ HEADLESS
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
2023-08-03 10:36:50.478993: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'cudart64_100.dll'; dlerror: cudart64_100.dll not found
2023-08-03 10:36:50.479046: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
2023-08-03 10:36:50.557135: I tensorflow/cc/saved_model/reader.cc:31] Reading SavedModel from: C:\Users\RUNNER~1\BLANK_~1\Fiji.app\models\the_model\
2023-08-03 10:36:50.597707: I tensorflow/cc/saved_model/reader.cc:54] Reading meta graph with tags { serve }
2023-08-03 10:36:50.657147: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
2023-08-03 10:36:50.659388: W tensorflow/stream_executor/platform/default/dso_loader.cc:55] Could not load dynamic library 'nvcuda.dll'; dlerror: nvcuda.dll not found
2023-08-03 10:36:50.659438: E tensorflow/stream_executor/cuda/cuda_driver.cc:318] failed call to cuInit: UNKNOWN ERROR (303)
2023-08-03 10:36:50.661716: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:169] retrieving CUDA diagnostic information for host: fv-az623-660
2023-08-03 10:36:50.661848: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:176] hostname: fv-az623-660
2023-08-03 10:36:50.883724: I tensorflow/cc/saved_model/loader.cc:202] Restoring SavedModel bundle.
2023-08-03 10:36:51.915218: I tensorflow/cc/saved_model/loader.cc:311] SavedModel load for tags { serve }; Status: success. Took 1358046 microseconds.
** script 2/2: COMPARING TO EXPECTED OUTPUT
OpenJDK 64-Bit Server VM warning: ignoring option PermSize=128m; support was removed in 8.0
OpenJDK 64-Bit Server VM warning: Using incremental CMS is deprecated and will likely be removed in a future release
FINISHED TESTING THE 31 MODELS WITH DEEPIMAGEJ IN FIJI AT 2023-08-03 10:37:13.794685
Logs are in D:\a\CI-deepimagej-bioimage-io\CI-deepimagej-bioimage-io\python_CI_scripts\..\test_summaries\fiji_log_out.txt and fiji_log_err.txt
Total Time Taken: 0:46:28.231060