Update setup cfg #3423

honnix · 2021-03-31T22:19:15Z

Attempt to address #2133

The idea is to use setuptools to parse setup.cfg and extract different requires. Unlike setup.py, things in setup.cfg are declarative so they won't change at build time.

jurre · 2021-04-01T18:56:21Z

Thanks @honnix, yeah I think this would be great to support. Is it right that we can just call updated_setup_requirement on these files as well?

Would be great to see some tests that explain how this is expected to behave!

honnix · 2021-04-01T18:59:59Z

@jurre Thanks for taking a look at this. And yes I think so. I will work on specs to see how it works. I wanted to open a PR to get early feedback so I won't go too far in a wrong direction. :)

luislew · 2021-04-06T04:44:47Z

👋🏻 I'm interested in this functionality, and was just stopping by to call out that setuptools already has a utility method for parsing the setup.py kwargs from a setup.cfg file, e.g.:

In [1]: import setuptools
In [2]: setuptools.config.read_configuration("setup.cfg")
Out[2]: 
defaultdict(dict,
            {'metadata': {'name': 'indy', 'version': '1.1.99'},
             'options': {'package_dir': {'': 'src'},
              'packages': ['indy',
               'indy.specs',
               'indy.models',
               'indy.cli',
               'indy.specs.analysis',
               'indy.specs.mixins',
               'indy.specs.deploy',
               'indy.specs.health',
               'indy.specs.build',
               'indy.cli.commands'],
              'install_requires': ['boto3==1.13.9',
               'cookiecutter==1.7.2',
               'dictdiffer==0.8.0',
               'fab-classic==1.15.0',
               'github3.py==0.9.5',
               'macos-keychain==0.2.1',
               'more_itertools==5.0.0',
               'nwpy-app-config==1.4.19',
               'nwpy-app-data==1.2.0',
               'nwpy-aws==2.0.4',
               'nwpy-awskms==1.0.1',
               'nwpy-cli==2.4.2',
               'nwpy-deployable==1.7.7',
               'nwpy-logging==2.13.12',
               'nwpy-museum-client==0.2.5',
               'nwpy-stream==0.2.3',
               'nwpy-target==0.4.3',
               'nwpy-terraform==0.0.87',
               'packaging==20.4',
               'pycobertura==2.0.1',
               'python-dateutil==2.8.1',
               'requests[security]==2.25.0',
               'schematics==2.1.0',
               'semantic_version==2.8.2',
               'setuptools>=41.2.0',
               'terraformpy==1.3.0',
               'toml==0.9.4',
               'xmltodict==0.10.2'],
              'entry_points': {'pex': ['script = indy'],
               'console_scripts': ['indy = indy.cli.main:main']},
              'extras_require': {'dev': ['responses==0.5.1',
                'sphinx-autoschematics==0.1.2']},
              'package_data': {'indy.specs.build': ['onboarding.version.rc.json']}}})

honnix · 2021-04-06T05:43:10Z

@luislew Nice. This is a lot better than using raw configparser. Thanks for the information and TIL.

honnix · 2021-04-06T07:17:45Z

@jurre This PR is ready to review. Could you please take a look at it whenever suitable? Thanks.

honnix · 2021-04-07T21:11:10Z

@jurre I'm not sure why poetry test failed.

honnix · 2021-04-07T21:30:21Z

Could it be due to python-poetry/poetry#3010 ?

honnix · 2021-04-08T06:04:48Z

So yeah seems randomly. Trying to address this in #3459

jurre · 2021-04-08T15:36:12Z

From a quick scan this looks fantastic @honnix, but I'm going to need a bit more time to thoroughly test and vet this, I'll try to find some time early next week. Thanks for working on this 🎉

honnix · 2021-04-08T16:19:36Z

@jurre Absolutely. Please take your time. I'm not very confident myself due to limited knowledge of the code base.

nschloe · 2021-04-12T14:17:54Z

Compare with #2281.

honnix · 2021-04-16T12:59:28Z

Hi @jurre, did you get some time to test this?

python/lib/dependabot/python/file_parser/setup_cfg_file_parser.rb

python/lib/dependabot/python/file_parser/setup_file_parser.rb

jurre · 2021-04-16T15:14:56Z

All in all the changes seem really good, there was one question/suggestion we had about the setup file parsers, but if we can clean that up a bit I'm 👍 on merging + shipping this after the weekend.

Thanks a bunch @honnix

python/helpers/lib/parser.py

honnix · 2021-04-16T19:01:28Z

python/helpers/lib/parser.py

@@ -57,38 +57,48 @@ def version_from_install_req(install_req):


 def parse_setup(directory):


I black formatted this function, so it is actually not so much change.

honnix · 2021-04-16T19:05:15Z

python/spec/dependabot/python/file_parser/setup_file_parser_spec.rb

-    fixture("setup_files", setup_file_fixture_name)
-  end
-  let(:setup_file_fixture_name) { "setup.py" }
+  describe "for setup.py" do


No real change in this hunk, just nested in a describe.

jurre

🎉

@feelepxyz would you also give the latest set of changes a 👀 ?

feelepxyz

Nice! Thanks for incorporating the changes and for all the test cases 💯 🙇

honnix · 2021-04-19T09:39:03Z

Thank you all for reviewing and providing great suggestions to this work. 🎉

Note the setup() includes only dynamically generated options. GitHub seems to have recently fixed their dependency scanning to look at setup.cfg (dependabot/dependabot-core#3423). Possibly not deployed to GitHub yet.

Breaks dependency graph until github starts using dependabot/dependabot-core#3423 (useless feature anyways without modern dependency parsing)

Note the setup() includes only dynamically generated options. GitHub seems to have recently fixed their dependency scanning to look at setup.cfg (dependabot/dependabot-core#3423). Possibly not deployed to GitHub yet.

This enables Dependabot to run every Tuesday at 10 AM (Stanford time), and notify us (by pull request) if a dependency has done an update. It's then on us to check if the update mandates a bump in our minimum required version for the dependency. Kudos to dependabot/dependabot-core#2133, dependabot/dependabot-core#2281, and dependabot/dependabot-core#3423 for enabling Dependabot support with `python.cfg` files!

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feat(init): add workspaces support ([@ruyadorno](https://github.com/ruyadorno)) * [`42ca59eee`](npm/cli@42ca59e) [#3086](npm/cli#3086) fix(ls): do not exit with error when all problems are extraneous deps ([@nlf](https://github.com/nlf)) * [`2aecec591`](npm/cli@2aecec5) [#2724](npm/cli#2724) [#3119](npm/cli#3119) fix(ls): make --long work when missing deps ([@ruyadorno](https://github.com/ruyadorno)) * [`42e0587a9`](npm/cli@42e0587) [#3115](npm/cli#3115) fix(pack): refuse to pack invalid packument ([@wraithgar](https://github.com/wraithgar)) * [`1c4eff7b5`](npm/cli@1c4eff7) [#3126](npm/cli#3126) fix(logout): use isBasicAuth attribute ([@wraithgar](https://github.com/wraithgar)) * [`c93f1c39e`](npm/cli@c93f1c3) [#3101](npm/cli#3101) chore(docs): update view docs ([@wraithgar](https://github.com/wraithgar)) * [`c4ff4bc11`](npm/cli@c4ff4bc) [npm/statusboard#313](npm/statusboard#313) [#3109](npm/cli#3109) fix(usage): fix refs to ws shorthand ([@ruyadorno](https://github.com/ruyadorno)) * [`83166ebcc`](npm/cli@83166eb) `npm-registry-fetch@10.1.0` * feat(auth): set isBasicAuth * [`e02bda6da`](npm/cli@e02bda6) `npm-registry-fetch@10.0.0` * feat(auth) load/send based on URI, not registry * [`a0382deba`](npm/cli@a0382de) `@npmcli/run-script@1.8.5` * fix: windows ComSpec env variable name * [`7f82ef5a8`](npm/cli@7f82ef5) `pacote@11.3.2` * [`35e49b94f`](npm/cli@35e49b9) `@npmcli/arborist@2.4.0` * [`95faf8ce6`](npm/cli@95faf8c) `libnpmaccess@4.0.2` * [`17fffc0e4`](npm/cli@17fffc0) `libnpmhook@6.0.2` * [`1b5a213aa`](npm/cli@1b5a213) `libnpmorg@2.0.2` * [`9f83e6484`](npm/cli@9f83e64) `libnpmpublish@4.0.1` * [`251f788c5`](npm/cli@251f788) `libnpmsearch@3.1.1` * [`35873a989`](npm/cli@35873a9) `libnpmteam@2.0.3` * [`23e12b4d8`](npm/cli@23e12b4) `npm-profile@5.0.3`

ColeDCrawford · 2022-11-22T16:02:08Z

@honnix can you point me at an example repo where dependabot successfully parses setup.cfg and opens dependency update PRs? Doesn't seem to be working for me here: https://github.com/Harvard-ATG/lts-iiif-ingest-service. I'd really like to have all the dependencies in setup.cfg rather than maintaining a duplicate requirements.txt just for Dependabot PRs.

honnix · 2022-11-22T16:06:01Z

@honnix can you point me at an example repo where dependabot successfully parses setup.cfg and opens dependency update PRs? Doesn't seem to be working for me here: https://github.com/Harvard-ATG/lts-iiif-ingest-service. I'd really like to have all the dependencies in setup.cfg rather than maintaining a duplicate requirements.txt just for Dependabot PRs.

@ColeDCrawford I don't have an example in the open source world (not even github.com), unfortunately, and I don't know how dependabot is set up for github.com. We have internal integration of dependabot and I can confirm it works.

deivid-rodriguez · 2022-11-22T18:50:11Z

@honnix Any particular update that you were expecting and didn't get. I run our dry-run script against your repo, and Dependabot run fine, just couldn't find any updates to propose.

honnix · 2022-11-22T18:52:00Z

@honnix Any particular update that you were expecting and didn't get. I run our dry-run script against your repo, and Dependabot run fine, just couldn't find any updates to propose.

I think you meant to ping @ColeDCrawford :)

deivid-rodriguez · 2022-11-22T18:53:54Z

Yes @honnix, I'm sorry 🤦

ColeDCrawford · 2022-11-22T18:57:35Z

This was a false alarm on my part. When I switched over to setup.cfg I made the dependency version patterns more permissive, so they are accepting a wider range of updates. There weren’t any new PRs because any recent dependency updates (e.g. boto3) resolved to the latest. I confirmed this by creating a test branch with a pinned old version of pillow and running Dependabot locally against it. That opened a PR as expected. Thanks for the follow up!

honnix added 3 commits March 31, 2021 23:58

Extend helper to support parsing setup.cfg

af60a6d

File parser for setup.cfg

1efe482

Fetcher and updater

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honnix mentioned this pull request Mar 31, 2021

Add support for Python dependencies in setup.cfg #2133

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honnix marked this pull request as ready for review April 2, 2021 16:05

honnix requested a review from a team as a code owner April 2, 2021 16:05

jurre reviewed Apr 16, 2021

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honnix and others added 7 commits April 16, 2021 20:36

Merge branch 'main' of github.com:dependabot/dependabot-core

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Fix flake8

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Test file parser

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Test file parser

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Fix fixture file

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Check setup.cfg as well

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Test file fetcher

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honnix added 3 commits April 16, 2021 20:36

Use setuptools to parse setup.cfg

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Merge parse_setup and parse_setup_cfg

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Parse both setup.py and setup.cfg

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honnix force-pushed the update-setup-cfg branch from 7f6e2af to ca4d292 Compare April 16, 2021 19:00

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honnix added 2 commits April 16, 2021 21:02

Remove empty line

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Delete unused class

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Simplify path

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feelepxyz merged commit 2606bdc into dependabot:main Apr 19, 2021

honnix deleted the update-setup-cfg branch April 19, 2021 09:38

luislew mentioned this pull request Apr 19, 2021

Support alternative pip-compile setup #1475

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nschloe mentioned this pull request Apr 26, 2021

Parse dependencies from Python setup.cfg files #2281

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olivia-hong mentioned this pull request Nov 9, 2021

Transform and load dependencies from setup.cfg lyft/cartography#718

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Start using a version matrix for unit tests Harvard-ATG/lts-iiif-ingest-service#155

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Update setup cfg #3423

Update setup cfg #3423

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		@@ -57,38 +57,48 @@ def version_from_install_req(install_req):


		def parse_setup(directory):

Update setup cfg #3423

Update setup cfg #3423

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