Info Typer errors after adding types to metadata database

[michael-conway]

#4 Possibly cause of jex not reporting back completed jobs...

Apr 5 12:23:36 dsai-de-svcs info-typer[1056]: {"@timestamp":"2017-04-05T12:23:36.704-04:00","@Version":1,"message":"[amqp/message-handler] [data-object.add] [{"author":{"name":"testde2","zone":"dsai_renci"},"entity":"/dsai_renci/home/testde2/analyses/DE_Word_Count_analysis1-2017-04-05-16-23-22.3/logs/condor-stdout-0","path":"/dsai_renci/home/testde2/analyses/DE_Word_Count_analysis1-2017-04-05-16-23-22.3/logs/condor-stdout-0","creator":{"name":"testde2","zone":"dsai_renci"},"size":44,"type":"generic"}]","loggerName":"info-typer.messaging","thread":"pool-1-thread-6","level":"INFO","HOSTNAME":"82346d9b9e23","group-id":"org.iplantc","art-id":"info-typer","amqp-delivery-tag":"15351","service":"info-typer","desc":"DE message handling service for file info type detection","app-name":"info-typer","service":"info-typer"}
Apr 5 12:23:36 dsai-de-svcs info-typer[1056]: {"@timestamp":"2017-04-05T12:23:36.752-04:00","@Version":1,"message":"clojure.lang.ExceptionInfo: throw+: {:error_code "ERR_INVALID_JSON", :payload "{\"author\":{\"name\":\"testde2\",\"zone\":\"dsai_renci\"},\"entity\":\"/dsai_renci/home/testde2/analyses/DE_Word_Count_analysis1-2017-04-05-16-23-22.3/logs/condor-stdout-0\",\"path\":\"/dsai_renci/home/testde2/analyses/DE_Word_Count_analysis1-2017-04-05-16-23-22.3/logs/condor-stdout-0\",\"creator\":{\"name\":\"testde2\",\"zone\":\"dsai_renci\"},\"size\":44,\"type\":\"generic\"}"} {:error_code "ERR_INVALID_JSON", :payload "{\"author\":{\"name\":\"testde2\",\"zone\":\"dsai_renci\"},\"entity\":\"/dsai_renci/home/testde2/analyses/DE_Word_Count_analysis1-2017-04-05-16-23-22.3/logs/condor-stdout-0\",\"path\":\"/dsai_renci/home/testde2/analyses/DE_Word_Count_analysis1-2017-04-05-16-23-22.3/logs/condor-stdout-0\",\"creator\":{\"name\":\"testde2\",\"zone\":\"dsai_renci\"},\"size\":44,\"type\":\"generic\"}"}\n\tat info_typer.messaging$get_file_id.invoke(messaging.clj:24)\n\tat info_typer.messaging$filetype_message_handler.invoke(messaging.clj:31)\n\tat info_typer.messaging$dataobject_added.invoke(messaging.clj:58)\n\tat info_typer.messaging$message_handler.invoke(messaging.clj:76)\n\tat clojure.core$partial$fn__4527.invoke(core.clj:2495)\n\tat langohr.consumers$create_default$fn__2512.invoke(consumers.clj:84)\n\tat langohr.consumers.proxy$com.rabbitmq.client.DefaultConsumer$ff19274a.handleDelivery(Unknown Source)\n\tat com.rabbitmq.client.impl.ConsumerDispatcher$5.run(ConsumerDispatcher.java:144)\n\tat com.rabbitmq.client.impl.ConsumerWorkService$WorkPoolRunnable.run(ConsumerWorkService.java:99)\n\tat java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)\n\tat java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)\n\tat java.lang.Thread.run(Thread.java:745)\nCaused by: java.lang.IllegalArgumentException: Invalid UUID string: /dsai_renci/home/testde2/analyses/DE_Word_Count_analysis1-2017-04-05-16-23-22.3/logs/condor-stdout-0\n\tat java.util.UUID.fromString(UUID.java:194)\n\tat info_typer.messaging$get_file_id.invoke(messaging.clj:22)\n\t... 11 more\n","loggerName":"info-typer.messaging","thread":"pool-1-thread-6","level":"ERROR","HOSTNAME":"82346d9b9e23","group-id":"org.iplantc","art-id":"info-typer","amqp-delivery-tag":"15351","service":"info-typer","desc":"DE message handling service for file info type detection","app-name":"info-typer","service":"info-typer"}
Apr 5 12:23:36 dsai-de-svcs info-typer[1056]: {"@timestamp":"2017-04-05T12:23:36.753-04:00","@Version":1,"message":"[amqp/message-handler] [data-object.add] [{"author":{"name":"testde2","zone":"dsai_renci"},"entity":"/dsai_renci/home/testde2/analyses/DE_Word_Count_analysis1-2017-04-05-16-23-22.3/logs/condor-stdout-0","path":"/dsai_renci/home/testde2/analyses/DE_Word_Count_analysis1-2017-04-05-16-23-22.3/logs/condor-stdout-0","creator":{"name":"testde2","zone":"dsai_renci"},"size":44,"type":"generic"}]","loggerName":"info-typer.messaging","thread":"pool-1-thread-5","level":"INFO","HOSTNAME":"82346d9b9e23","group-id":"org.iplantc","art-id":"info-typer","amqp-delivery-tag":"15352","service":"info-typer","desc":"DE message handling service for file info type detection","app-name":"info-typer","service":"info-typer"}

[michael-conway]

entity of that message seems to expect a GUID, what gives?

$writeFlag = 0
Topic: data-object.add
Message Format:
{
“author”: <user object - the agent of change>,
“entity”: <the data object’s GUID>,
“path”: <string - the logical path to the data object>,
“creator”: <user object - the creator of the data object>,
“size”: <number - the size in bytes of the data>,
“type”: <string - the type of the data object, if known>
}