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[MRG] CQF based storage #1675

Merged
merged 38 commits into from
Jul 26, 2017
Merged

[MRG] CQF based storage #1675

merged 38 commits into from
Jul 26, 2017

Commits on Jul 13, 2017

  1. compilation w/CQF works

    @ctb @betatim
    ctb authored and betatim committed Jul 13, 2017
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  2. Tweak CQF setup to make it run on linux

    @betatim
    betatim committed Jul 13, 2017
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  3. First working CQF storage

    @betatim
    betatim committed Jul 13, 2017
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  4. Exploring CQF options

    @betatim
    betatim committed Jul 13, 2017
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  5. Modify qf_insert and qf_count_key_value to mod key 

    Compute key % number_of_slots before trying to look up the key.
    @betatim
    betatim committed Jul 13, 2017
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  6. Add mod taking to the storage class, not CQF directly

    @betatim
    betatim committed Jul 13, 2017
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  7. Remove debug output

    @betatim
    betatim committed Jul 13, 2017
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  8. Add missing header

    @betatim
    betatim committed Jul 13, 2017
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  9. Remove linking to SSL 

    openssl isn't actually required to use CQF
    @betatim
    betatim committed Jul 13, 2017
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  10. Add friendlier interface

    @betatim
    betatim committed Jul 13, 2017
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  11. Update common table type tests to check QFCounttable

    @betatim
    betatim committed Jul 13, 2017
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  12. Add build commands for the CQF code

    @betatim
    betatim committed Jul 13, 2017
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  13. Add missed namespace renames and return type change

    @betatim
    betatim committed Jul 13, 2017
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  14. Experimenting with adding a cython interface

    @betatim
    betatim committed Jul 13, 2017
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  15. Add docstrings to basic cython interface

    @betatim
    betatim committed Jul 13, 2017
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  16. Handle overloading by hand

    @betatim
    betatim committed Jul 13, 2017
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  17. Huzzah!

    @betatim
    betatim committed Jul 13, 2017
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  18. Build up the cython interface

    @betatim
    betatim committed Jul 13, 2017
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  19. Experiment with ReadParser support

    @betatim
    betatim committed Jul 13, 2017
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  20. Switch to cython reads parser

    @betatim
    betatim committed Jul 13, 2017
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  21. Add abundance_distribution method

    @betatim
    betatim committed Jul 13, 2017
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  22. Add abundance_distribution_with_reads_parser

    @betatim
    betatim committed Jul 13, 2017
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  23. Update c++ examples for CQF

    @betatim
    betatim committed Jul 13, 2017
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  24. Move __new__ code to __cinit__

    @betatim
    betatim committed Jul 13, 2017
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  25. Switch to using ReadParser everywhere

    @betatim
    betatim committed Jul 13, 2017
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  26. Remove log2() for python2 compatibility

    @betatim
    betatim committed Jul 13, 2017
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  27. Disable SSE4.2 extensions

    @betatim
    betatim committed Jul 13, 2017
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  28. Move QF struct definition to header file

    @betatim
    betatim committed Jul 13, 2017
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  29. Add load/save to QFCounttable

    @betatim
    betatim committed Jul 13, 2017
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  30. Add CQF to liboxli (fixes make cpp-demo)

    @betatim
    betatim committed Jul 13, 2017
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  31. Temporary commit while working out noccupied details

    @betatim
    betatim committed Jul 13, 2017
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  32. Add methods to query n_occupied slots in CQF storage

    @betatim
    betatim committed Jul 13, 2017
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  33. Add CHANGELOG message

    @betatim
    betatim committed Jul 13, 2017
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  34. Switch definition of count and add in QFCounttable 

    This way we can have one implementation and stick to the API
    @betatim
    betatim committed Jul 13, 2017
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  35. Refactor inheritence structure of cython classes

    @betatim
    betatim committed Jul 13, 2017
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  36. Add proper support for passing on custom exceptions

    @betatim
    betatim committed Jul 13, 2017
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Commits on Jul 20, 2017

  1. Merge branch 'master' into try/cqf_storage

    @camillescott
    camillescott committed Jul 20, 2017
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Commits on Jul 26, 2017

  1. Merge remote-tracking branch 'origin' into try/cqf_storage

    @camillescott
    camillescott committed Jul 26, 2017
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