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Add tools definition for Galaxy integration.
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This file needs to be added to the tools/data_source/ directory of a
Galaxy instance.
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rekado committed May 8, 2015
1 parent 523399c commit 804fcd2
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22 changes: 22 additions & 0 deletions dorina-galaxy.xml
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<?xml version="1.0"?>
<tool name="DoRiNA Search" id="dorina_search" tool_type="data_source">
<description>DoRiNA data source</description>
<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>

<inputs action="http://dorina.mdc-berlin.de/go" check_values="false" method="get" target="_top">
<display>go to DoRiNA search $GALAXY_URL</display>
<param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
<param name="tool_id" type="hidden" value="dorina_search" />
<param name="sendToGalaxy" type="hidden" value="1" />
</inputs>

<request_param_translation>
<request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
<request_param galaxy_name="URL" remote_name="URL" missing="" />
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="tabular" label="${tool.name}"/>
</outputs>
<options sanitize="False" refresh="True"/>
</tool>

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