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Add tools definition for Galaxy integration.
This file needs to be added to the tools/data_source/ directory of a Galaxy instance.
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<?xml version="1.0"?> | ||
<tool name="DoRiNA Search" id="dorina_search" tool_type="data_source"> | ||
<description>DoRiNA data source</description> | ||
<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> | ||
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<inputs action="http://dorina.mdc-berlin.de/go" check_values="false" method="get" target="_top"> | ||
<display>go to DoRiNA search $GALAXY_URL</display> | ||
<param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> | ||
<param name="tool_id" type="hidden" value="dorina_search" /> | ||
<param name="sendToGalaxy" type="hidden" value="1" /> | ||
</inputs> | ||
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<request_param_translation> | ||
<request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" /> | ||
<request_param galaxy_name="URL" remote_name="URL" missing="" /> | ||
</request_param_translation> | ||
<uihints minwidth="800"/> | ||
<outputs> | ||
<data name="output" format="tabular" label="${tool.name}"/> | ||
</outputs> | ||
<options sanitize="False" refresh="True"/> | ||
</tool> |