Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How to improve the acceptance rate of "mBirthDeath"? #68

Open
ZheCai opened this issue Aug 27, 2022 · 0 comments
Open

How to improve the acceptance rate of "mBirthDeath"? #68

ZheCai opened this issue Aug 27, 2022 · 0 comments

Comments

@ZheCai
Copy link

ZheCai commented Aug 27, 2022

Hi all,

When running eems on my data, the acceptance rate of "mBirthDeath" is always lower than 10%. Which parameters I should tune to improve the acceptance rate?

Thanks!

The end of the output:

Ending iteration 20000000 with acceptance proportions:
(463182/1249153) = 37.08% for proposal type "qTileRate", with proposal variance "qEffctProposalS2"
(418360/1251545) = 33.43% for proposal type "qTileMove", with proposal variance "qSeedsProposalS2"
(284344/1251259) = 22.72% for proposal type "qBirthDeath"
(1543607/3749139) = 41.17% for proposal type "mTileRate", with proposal variance "mEffctProposalS2"
(655820/2500832) = 26.22% for proposal type "mMeanRate", with proposal variance "mrateMuProposalS2"
(1325567/3748755) = 35.36% for proposal type "mTileMove", with proposal variance "mSeedsProposalS2"
(310662/3748524) = 8.29% for proposal type "mBirthDeath"
(1188935/2500793) = 47.54% for proposal type "degrees of freedom"
and effective degrees of freedom = 9562.16
number of qVoronoi tiles = 61
number of mVoronoi tiles = 134
Log prior = 49.15
Log llike = 1148073.79
Final log prior: 49.15
Final log llike: 1148073.79

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant