Install Miniconda for Python 3+: https://docs.conda.io/en/latest/miniconda.html
conda create -n SymphonyEnv python=3.6.10 pip
conda activate SymphonyEnv
pip install -r requirements.txtjupyter notebook notebooks/SymphonyDemo.ipynbThe input files for running the demo notebook can be accessed here: https://tinyurl.com/yaba9xuq
Symphony is associated with the following publication: Bachireddy, Azizi, et al. Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy, Cell Reports, 2021.
Processed data and more information can be found here: https://sites.google.com/view/tcellsdli