invalid class “splrMatrix” object: superclass "mMatrix" not defined in the environment of the object's class

[youngser]

Here is an error I'm getting with center_graph:

> A <- sample_correlated_gnp_pair(n = 10, corr = .5, p = .5)$graph1
> center_graph(A, scheme = "center")
Error in validObject(.Object) : 
  invalid class “splrMatrix” object: superclass "mMatrix" not defined in the environment of the object's class

and I got a similar error with gm:

> AB <- sample_correlated_gnp_pair(n = 10, corr = .5, p = .5)
> A = AB$graph1
> B = AB$graph2
> gm(A, B)
Error in validObject(.Object) : 
  invalid class “splrMatrix” object: superclass "mMatrix" not defined in the environment of the object's class

and this:

> gm(A, B, start='convex')
Error in validObject(.Object) : 
  invalid class “splrMatrix” object: superclass "mMatrix" not defined in the environment of the object's class

Maybe this is not directly related, but this option also gives an error:

> gm(A, B, start='rds_perm_bari')
Error in rds_perm_bari_start(nns, ns, soft_seeds, ...) : 
  unused arguments (A = new("dgCMatrix", i = c(2, 4, 5, 6, 9, 2, 3, 4, 5, 7, 8, 9, 0, 1, 3, 5, 6, 8, 1, 2, 4, 5, 6, 7, 0, 1, 3, 5, 8, 0, 1, 2, 3, 4, 6, 7, 9, 0, 2, 3, 5, 7, 1, 3, 5, 6, 8, 1, 2, 4, 7, 9, 0, 1, 5, 8), p = c(0, 5, 12, 18, 24, 29, 37, 42, 47, 52, 56), Dim = c(10, 10), Dimnames = list(NULL, NULL), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()), B = new("dgCMatrix", 
    i = c(2, 4, 5, 7, 9, 2, 3, 4, 5, 7, 9, 0, 1, 3, 6, 7, 8, 1, 2, 6, 7, 9, 0, 1, 5, 6, 8, 9, 0, 1, 4, 6, 2, 3, 4, 5, 7, 9, 0, 1, 2, 3, 6, 9, 2, 4, 9, 0, 1, 3, 4, 6, 7, 8), p = c(0, 5, 11, 17, 22, 28, 32, 38, 44, 47, 54), Dim = c(10, 10), Dimnames = list(NULL, NULL), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()))

Here is my R environment.

> sessionInfo()
R version 4.3.2 (2023-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.2.1

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/New_York
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] iGraphMatch_2.0.3

loaded via a namespace (and not attached):
 [1] compiler_4.3.2  magrittr_2.0.3  Matrix_1.6-5    cli_3.6.2       igraph_2.0.3   
 [6] glue_1.6.2      Rcpp_1.0.11     grid_4.3.2      lifecycle_1.0.4 pkgconfig_2.0.3
[11] rlang_1.1.2     lattice_0.22-5   

[dpmcsuss]

Can you try updating to iGraphMatch 2.0.4?

[youngser]

It's better except the last one, which still gives the same error !?
Thanks!

[dpmcsuss]

Ahh, that is actually a bug. You can avoid it for now using start <- init_start(nns = 10, start = 'rds_perm_bari') and then setting start = start in the gm call.

I'll have to fix this though.