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Hi,
When executing the test script an error is raised for not finding make_biom.py, supposedly in the scripts directory.
python ../scripts/make_biom.py /tarp-ngs/bit/scripts/16S/mucobiome/working_directory -o raw.biom
python: can't open file '../scripts/make_biom.py': [Errno 2] No such file or directory
Error in job create_biom while creating output file raw.biom.
RuleException:
CalledProcessError in line 108 of /tarp-ngs/bit/scripts/16S/mucobiome/Snakefile:
Command 'python ../scripts/make_biom.py /tarp-ngs/bit/scripts/16S/mucobiome/working_directory -o raw.biom' returned non-zero exit status 2
File "/tarp-ngs/bit/scripts/16S/mucobiome/Snakefile", line 108, in __rule_create_biom
File "/home/ubuntu/miniconda3/envs/mucobiome/lib/python3.5/concurrent/futures/thread.py", line 55, in run
Thank you!
The text was updated successfully, but these errors were encountered:
I have no idea where the file is .. :(
So I rewrite a new one ( b09e045 ) using numpy, pandas, biom et Bio::SeqIO library.
Tell me if the last commit fix the issue. Then I will create a singularity package to make it run easier.
Hi,
When executing the test script an error is raised for not finding make_biom.py, supposedly in the scripts directory.
Thank you!
The text was updated successfully, but these errors were encountered: