Feature 1824 pb2nc log message for mlcape

* for #1275, fix issue with more than 1000 object for mode, ci-run-unit

* Per #1275, just deleting stale, commented-out code.

Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>

Co-authored-by: davidfillmore <fillmore.winslow.david@gmail.com>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu>

…1.0-rc1 release.

…ific input data if running tests on main_v branch

… branch.

Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: johnhg <johnhg@ucar.edu>

…2109)

Co-authored-by: John Halley Gotway <johnhg@ucar.edu>

* Updating configuration and modulefiles

* Removed jet files

…METplus testing workflow

* Update the top-level README file to list ioda2nc, but also to trigger GHA to run for this new main_v10.1-ref branch.

* Added bool Sorted variable, set to true or false in relevant functions. Updated sort() function. SL

* In parse_sid_mask(), added the line: mask_sid.sort(). SL

* Per issue #1950, put in some cout statements for testing. SL

* Per issue #1950, working in has() function, checking for Sort and put in initial cout's for testing. SL

* Per issue #1950: Cleaned up some cout (print) statements. Left one in there that is commented out for future testing. SL

* Per issue #1950: modified has() function. Added lower_bound search for sorted arrays. Left some print (cout) statements in there for further testing. SL

* Per issue #1950: In has(), I commented out the print (cout) statements for time testing. SL

* added logic to manually trigger a workflow via the GitHub… (#2107)

* Per issue #1950, put back in some print (cout) statements for testing. SL

* Per issue #1950: in has() function, experimenting using the upper_bound() search instead of lower_bound() for sorted vectors. In progress. SL

* Per issue #1950: added a new has function that uses binary_search. Re-working the other has() functions related to this. SL

* Per issue #1950: re-worked original has(), basically reverted back to what it was...but it's now only used for unsorted vectors or for a case insensitive search. Cleaned up. SL

* Per issue #1950: in section that checks Obs Station Id in SID masking list, changed cout to a mlog (debug) statement. SL

* Per issue #1950: created new mask station id list (CONUS METARs) and modified the PointStatConfig_MASK_SID config file to use this list along with the existing lists. SL

* Per issue #1950: reverted back to orginal sid mask site-lists. SL

* Per issue #1950: checking in this site-list that was used for testing point_stat. SL

* Per issue #1950, modified and added better debugging to figure out current issue with ascii2nc. SL

* Per #1950, small tweak in ascii2nc to make it slightly more efficient. After adding the new obs varable name to the end of the list, we can compute var_index direclty without needing to call StringArray::has() a second time.

* Per #1950: removed mlog and cout print statements from has() functions. Cleaned up. SL

* Update met/src/basic/vx_log/string_array.cc

Co-authored-by: johnhg <johnhg@ucar.edu>

* Update met/src/basic/vx_log/string_array.cc

Co-authored-by: johnhg <johnhg@ucar.edu>

* Update met/src/basic/vx_log/string_array.cc

Co-authored-by: johnhg <johnhg@ucar.edu>

* Update met/src/basic/vx_log/string_array.cc

Co-authored-by: johnhg <johnhg@ucar.edu>

* Update met/src/basic/vx_log/string_array.cc

Co-authored-by: johnhg <johnhg@ucar.edu>

* Update met/src/basic/vx_log/string_array.h

Co-authored-by: johnhg <johnhg@ucar.edu>

* Delete SID_CONUS.txt

* Delete SID_CONUS_times11.txt

Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>

Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>

Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: johnhg <johnhg@ucar.edu>

Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
Co-authored-by: johnhg <johnhg@ucar.edu>
Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com>
Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu>
Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>
Co-authored-by: davidfillmore <fillmore.winslow.david@gmail.com>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: Seth Linden <linden@ucar.edu>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: John Halley Gotway <johnhg@seneca.rap.ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: mo-mglover <78152252+mo-mglover@users.noreply.github.com>
Co-authored-by: davidalbo <dave@ucar.edu>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>

… variable-length strings passed to ascii2nc.

Feature dtcenter/METplus-Internal#14 fixed length array

…t causes the nightly build to fail.

* bug fix for NAN and for using missing data as if its not missing

* added parameters to control converting winds to tangential/radial components

* bug fixes

* Refactored to put wind conversion into it's own class TCRMW_WindConverter

* changed default for converting winds to TRUE, and put parameters for wind conversion into the unit test config files

* Per #2072, updating tc_rmw Makefile.in to compile new files.

* Per #2072, update to the output from the lex/yacc version on seneca.

* Changed Error to Warning in mlog messages, for consistency with MET conventions

* Removing commented out code.

* Per #2072, combine warnings spread across multiple lines into a single call to the logger. Replace references to ugrid/vgrid with u/v wind. Fix a typo and clean up some whitespace.

Co-authored-by: Dave Albo <dave@seneca.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>

* Per #2022: Added ANOM_CORR, ANOM_CORR_BCL, ANOM_CORR_BCU to vcnt_columns. SL

* Per #2022: Added ANOM_CORR, ANOM_CORR_BCL, ANOM_CORR_BCU to write_vcnt_cols. SL

* Per #2022: Added ANOM_CORR to VL1L2Info. SL

* Per #2022: updated the VL1L2Info functions to initialize and compute ANOM_CORR. SL

* Per #2022: in calc_ncep_stats modified calculation for ANOM_CORR to check for bad data in the denominator first. SL

* Per #2022: for the VL1L2Info, changed all derived VCNT variables to be CIInfo objects (instead of doubles). SL

* Per #2022: making changes to VL1L2Info related to making all VCTN variables CIInfo objects. In progress. SL

* Per #2022: Added ANOM_CORR_UNCNTR. SL

* Per issue 2022: Modified functions in the VL1L2Info class to set the NCEP stat variables correctly since they are now CIInfo class memembers. SL

* Per issue 2022: Added ANOM_CORR_UNCNTR (_BCL, _BCU). SL

* Per issue 2022: modified write_vcnt_cols(), added ANOM_CORR_UNCNTR (_BCL, _BCU). SL

* Per issue #2022: updated write_vcnt_cols. VCNT variables are now CIInfo objects to have to .v for the value. SL

* Per issue #2022: In calc_ncep_stats, put in place-holder for ANOM_CORR.v value SL

* Per issue #2022: in calc_ncep_stats(), changed placeholder for ANOM_CORR. SL

* Per issue #2022: moved alpha initialization to the init_from_scratch() function. SL

* Per issue #2022: in calc_ncep_stats(), set ANOM_CORR to bad_data_double as a placeholder for now. SL

* Per issue #2022: in vcnt_cols(), added ANOM_CORR_NCL/NCU. SL

* Per issue #2022: in write_vcnt_cols(), added ANOM_CORR_NCL/NCU variables. SL

* Per #2022, adding new VCNT columns to the header table files, User's Guide documentation, and lining some code up more consistently.

* Per #2022, added FA_SPEED_BAR and OA_SPEEED_BAR to the VAL1L2 line type. Added code to compute the ANOM_CORR confidence interval. However, I still need to update the writing of the VCNT line type to set the alpha value and actually write the computed CI's.

* Per #2022, update the writing of the VCNT output line to write the alpha value and anomaly correlation CI's.

* Per #2022, update point_stat and grid_stat to allocate alpha values for VL1L2Info objects to store CI's.

* Per #2022, call VL1L2Info::zero_out() instead of clear() so that we don't throw away allocated alpha values.

* Per #2022, update the Point-Stat and Grid-Stat logic to include the number of alpha values when deciding how many VCNT lines to write.

* Per #2022, update the VL1L2Info::operator+= logic to copy over the allocated alpha values.

* Per #2022, enhance stat_analysis to support an aggregate_stat job type for VAL1L2->VCNT. This writes ANOM_CORR and ANOM_CORR_UNCNTR output columns. However, there are still things to address. The other stats should be written as NA instead of 0. Recommend changing the VL1L2Info::zero_out() function to intialize stat values to NA instead of 0. Need to update the docs to reflect this support. Also need to actually compute the parametric CI's for ANOM_CORR. Big picture, we should store the VCNT stats in a new VCNTInfo class... just like the SL1L2Info/CNTInfo setup. Storing the sums AND stats in the same VL1L2Info class is unnecessarily confusing.

* Per #2022, update Stat-Analysis docs to list VAL1L2 -> VCNT as a supported conversion type.

* Per #2022, when computing VL1L2Info CI's, n should be set to vacount rather than the number of input pairs.

* Per #2022, add a new call to Stat-Analysis to exercise the VAL1L2 to VCNT conversion.

* Per #2022, ci-run-unit fix an aggregation bug in VL1L2Info::operator+=().

* Per issue #2022, added _vcnt.txt output files to check to relevant tests based on if vcnt output file is being generated via the config file. SL

Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>

…cur_time_index

…cur_time_index. Support value instead of offset for time and z level

…narqube_python

Feature dtcenter/METplus-Internal#16 sonarqube python

…/scripts/sonarqube

Proceeding with the merge without an external review based on the details listed above.

…_value

…d new CTC and CTS columns. Prevoiusly the CTC columns = NBRCTC columns and CTS = NBRCTS. But that is no longer the case. This updates write_nbrctc_cols() and write_nbrcts_cols() to actually write them rather than just calling the functions to write CTC and CTS cols, respectively.

…ternal_16_sonarqube_python2

…_value

… at the base API

…narqube_python2

dtcenter/METplus-Internal#16 Moved from scripts/sonarqube to internal…

…le_factor

Bugfix #2187 develop add_offset_and_scale_factor