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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(GO_enrichment_analysis)
export(GeneSelectR)
export(annotate_gene_lists)
export(calculate_overlap_coefficients)
export(calculate_permutation_feature_importance)
export(compute_GO_child_term_metrics)
export(configure_environment)
export(define_sklearn_modules)
export(evaluate_test_metrics)
export(get_feature_importances)
export(import_python_packages)
export(install_python_packages)
export(perform_grid_search)
export(pipeline_to_list)
export(plot_feature_importance)
export(plot_metrics)
export(plot_overlap_heatmaps)
export(plot_upset)
export(run_multiple_simplifyGO)
export(run_simplify_enrichment)
export(set_reticulate_python)
export(skip_if_no_modules)
export(split_data)
exportClasses(AnnotatedGeneLists)
exportClasses(GeneList)
exportClasses(PipelineResults)
exportClasses(TestMetrics)
importFrom(RColorBrewer,brewer.pal)
importFrom(cowplot,plot_grid)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,setdiff)
importFrom(dplyr,slice)
importFrom(dplyr,starts_with)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(glue,glue)
importFrom(magrittr,"%>%")
importFrom(magrittr,'%>%')
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,representation)
importFrom(methods,slot)
importFrom(reshape2,melt)
importFrom(reticulate,conda_create)
importFrom(reticulate,conda_list)
importFrom(reticulate,import)
importFrom(reticulate,py_bool)
importFrom(reticulate,py_has_attr)
importFrom(reticulate,py_install)
importFrom(reticulate,py_module_available)
importFrom(reticulate,py_to_r)
importFrom(reticulate,r_to_py)
importFrom(reticulate,tuple)
importFrom(rlang,.data)
importFrom(stats,phyper)
importFrom(stats,reorder)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(testthat,skip)
importFrom(tibble,enframe)
importFrom(tidyr,unnest_longer)
importFrom(tidyr,unnest_wider)
importFrom(tmod,modOverlaps)
importFrom(utils,install.packages)
importFrom(utils,menu)
importFrom(utils,modifyList)