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DSK merges kmers and reverse complements #17

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sesh-sas opened this issue Mar 2, 2015 · 1 comment
Closed

DSK merges kmers and reverse complements #17

sesh-sas opened this issue Mar 2, 2015 · 1 comment

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@sesh-sas
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sesh-sas commented Mar 2, 2015

Since most properties of kmers and their RCs will be the same, this is fine through swga filter.

However sets may exist that can include primerA and primerB(RC) but not primerA and primerB (due to heterodimer checks).

So we need to include the RC of active primers in swga find_sets
@eclarke
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eclarke commented Mar 2, 2015

All reverse complements are added during swga count for simplicity. Fixed in 2721611

@eclarke eclarke closed this as completed Mar 2, 2015
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@eclarke @sesh-sas