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Measuring the precipitation trend uncertainty #83

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gmandorl opened this issue May 24, 2024 · 8 comments · May be fixed by #84
Open

Measuring the precipitation trend uncertainty #83

gmandorl opened this issue May 24, 2024 · 8 comments · May be fixed by #84
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@gmandorl
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gmandorl commented May 24, 2024

Data Type

Satellite ECVs - Atmosphere Physics

Assessment Category

Uncertainty

Dataset Name

satellite-precipitation

Question Number

1

Workflow ID

eqctier3-767b1bcd-e6f0-4df3-aa9f-b0aa50c1df4d

Zipped Notebook

satellite-precipitation_validation_q1.zip

Environment

name: wp5
channels:
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - affine=2.4.0=pyhd8ed1ab_0
  - aiohttp=3.9.5=py311h459d7ec_0
  - aiosignal=1.3.1=pyhd8ed1ab_0
  - alsa-lib=1.2.11=hd590300_1
  - annotated-types=0.6.0=pyhd8ed1ab_0
  - ansicolors=1.1.8=pyhd8ed1ab_0
  - antlr-python-runtime=4.11.1=pyhd8ed1ab_0
  - anyio=4.3.0=pyhd8ed1ab_0
  - argon2-cffi=23.1.0=pyhd8ed1ab_0
  - argon2-cffi-bindings=21.2.0=py311h459d7ec_4
  - arrow=1.3.0=pyhd8ed1ab_0
  - asciitree=0.3.3=py_2
  - asttokens=2.4.1=pyhd8ed1ab_0
  - async-lru=2.0.4=pyhd8ed1ab_0
  - attr=2.5.1=h166bdaf_1
  - attrs=23.2.0=pyh71513ae_0
  - aws-c-auth=0.7.18=he0b1f16_0
  - aws-c-cal=0.6.11=heb1d5e4_0
  - aws-c-common=0.9.15=hd590300_0
  - aws-c-compression=0.2.18=hce8ee76_3
  - aws-c-event-stream=0.4.2=h01f5eca_8
  - aws-c-http=0.8.1=hdb68c23_10
  - aws-c-io=0.14.7=hbfbeace_6
  - aws-c-mqtt=0.10.4=h50844eb_0
  - aws-c-s3=0.5.7=h6be9164_2
  - aws-c-sdkutils=0.1.15=hce8ee76_3
  - aws-checksums=0.1.18=hce8ee76_3
  - aws-crt-cpp=0.26.8=h2150271_2
  - aws-sdk-cpp=1.11.267=hddb5a97_7
  - azure-core-cpp=1.11.1=h91d86a7_1
  - azure-identity-cpp=1.6.0=hf1915f5_1
  - azure-storage-blobs-cpp=12.10.0=h00ab1b0_1
  - azure-storage-common-cpp=12.5.0=h94269e2_4
  - babel=2.14.0=pyhd8ed1ab_0
  - beautifulsoup4=4.12.3=pyha770c72_0
  - bleach=6.1.0=pyhd8ed1ab_0
  - blosc=1.21.5=hc2324a3_1
  - bokeh=3.4.1=pyhd8ed1ab_0
  - bottleneck=1.3.8=py311h1f0f07a_0
  - branca=0.7.2=pyhd8ed1ab_0
  - brotli=1.1.0=hd590300_1
  - brotli-bin=1.1.0=hd590300_1
  - brotli-python=1.1.0=py311hb755f60_1
  - bzip2=1.0.8=hd590300_5
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  - cfitsio=4.4.0=hbdc6101_1
  - cftime=1.6.3=py311h1f0f07a_0
  - charset-normalizer=3.3.2=pyhd8ed1ab_0
  - click=8.1.7=unix_pyh707e725_0
  - click-plugins=1.1.1=py_0
  - cligj=0.7.2=pyhd8ed1ab_1
  - cloudpickle=3.0.0=pyhd8ed1ab_0
  - cmocean=4.0.3=pyhd8ed1ab_0
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  - colorspacious=1.1.2=pyh24bf2e0_0
  - comm=0.2.2=pyhd8ed1ab_0
  - contourpy=1.2.1=py311h9547e67_0
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  - cytoolz=0.12.3=py311h459d7ec_0
  - dask=2024.5.0=pyhd8ed1ab_0
  - dask-core=2024.5.0=pyhd8ed1ab_0
  - dask-expr=1.1.0=pyhd8ed1ab_0
  - dbus=1.13.6=h5008d03_3
  - debugpy=1.8.1=py311hb755f60_0
  - decorator=5.1.1=pyhd8ed1ab_0
  - defusedxml=0.7.1=pyhd8ed1ab_0
  - distributed=2024.5.0=pyhd8ed1ab_0
  - eccodes=2.35.0=he84ddb8_0
  - entrypoints=0.4=pyhd8ed1ab_0
  - esmf=8.6.1=nompi_h7b237b1_0
  - esmpy=8.6.1=pyhc1e730c_0
  - exceptiongroup=1.2.0=pyhd8ed1ab_2
  - executing=2.0.1=pyhd8ed1ab_0
  - expat=2.6.2=h59595ed_0
  - fasteners=0.17.3=pyhd8ed1ab_0
  - findlibs=0.0.5=pyhd8ed1ab_0
  - fiona=1.9.6=py311hf8e0aa6_0
  - flox=0.9.6=pyhd8ed1ab_0
  - fmt=10.2.1=h00ab1b0_0
  - folium=0.16.0=pyhd8ed1ab_0
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
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  - font-ttf-ubuntu=0.83=h77eed37_2
  - fontconfig=2.14.2=h14ed4e7_0
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=0
  - fonttools=4.51.0=py311h459d7ec_0
  - fqdn=1.5.1=pyhd8ed1ab_0
  - freeglut=3.2.2=hac7e632_2
  - freetype=2.12.1=h267a509_2
  - freexl=2.0.0=h743c826_0
  - frozenlist=1.4.1=py311h459d7ec_0
  - fsspec=2024.3.1=pyhca7485f_0
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  - geopandas=0.14.4=pyhd8ed1ab_0
  - geopandas-base=0.14.4=pyha770c72_0
  - geos=3.12.1=h59595ed_0
  - geotiff=1.7.1=h6cf1f90_16
  - gettext=0.22.5=h59595ed_2
  - gettext-tools=0.22.5=h59595ed_2
  - gflags=2.2.2=he1b5a44_1004
  - giflib=5.2.2=hd590300_0
  - glib=2.80.0=hf2295e7_6
  - glib-tools=2.80.0=hde27a5a_6
  - glog=0.7.0=hed5481d_0
  - graphite2=1.3.13=h59595ed_1003
  - greenlet=3.0.3=py311hb755f60_0
  - gst-plugins-base=1.24.3=h9ad1361_0
  - gstreamer=1.24.3=haf2f30d_0
  - h11=0.14.0=pyhd8ed1ab_0
  - h2=4.1.0=pyhd8ed1ab_0
  - harfbuzz=8.4.0=h3d44ed6_0
  - hdf4=4.2.15=h2a13503_7
  - hdf5=1.14.3=nompi_h4f84152_101
  - hpack=4.0.0=pyh9f0ad1d_0
  - httpcore=1.0.5=pyhd8ed1ab_0
  - httpx=0.27.0=pyhd8ed1ab_0
  - hyperframe=6.0.1=pyhd8ed1ab_0
  - icu=73.2=h59595ed_0
  - idna=3.7=pyhd8ed1ab_0
  - importlib-metadata=7.1.0=pyha770c72_0
  - importlib_metadata=7.1.0=hd8ed1ab_0
  - importlib_resources=6.4.0=pyhd8ed1ab_0
  - ipykernel=6.29.3=pyhd33586a_0
  - ipython=8.22.2=pyh707e725_0
  - isoduration=20.11.0=pyhd8ed1ab_0
  - jasper=4.2.4=h536e39c_0
  - jedi=0.19.1=pyhd8ed1ab_0
  - jinja2=3.1.4=pyhd8ed1ab_0
  - joblib=1.4.2=pyhd8ed1ab_0
  - json-c=0.17=h7ab15ed_0
  - json5=0.9.25=pyhd8ed1ab_0
  - jsonpointer=2.4=py311h38be061_3
  - jsonschema=4.22.0=pyhd8ed1ab_0
  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
  - jsonschema-with-format-nongpl=4.22.0=pyhd8ed1ab_0
  - jupyter-lsp=2.2.5=pyhd8ed1ab_0
  - jupyter-server-proxy=4.1.2=pyhd8ed1ab_0
  - jupyter_client=8.6.1=pyhd8ed1ab_0
  - jupyter_core=5.7.2=py311h38be061_0
  - jupyter_events=0.10.0=pyhd8ed1ab_0
  - jupyter_server=2.14.0=pyhd8ed1ab_0
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  - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
  - jupyterlab_server=2.27.1=pyhd8ed1ab_0
  - kealib=1.5.3=h2f55d51_0
  - keyutils=1.6.1=h166bdaf_0
  - kiwisolver=1.4.5=py311h9547e67_1
  - krb5=1.21.2=h659d440_0
  - lame=3.100=h166bdaf_1003
  - lcms2=2.16=hb7c19ff_0
  - ld_impl_linux-64=2.40=h55db66e_0
  - lerc=4.0.0=h27087fc_0
  - libabseil=20240116.2=cxx17_h59595ed_0
  - libaec=1.1.3=h59595ed_0
  - libarchive=3.7.2=h2aa1ff5_1
  - libarrow=15.0.2=hefa796f_6_cpu
  - libarrow-acero=15.0.2=hbabe93e_6_cpu
  - libarrow-dataset=15.0.2=hbabe93e_6_cpu
  - libarrow-flight=15.0.2=hc4f8a93_6_cpu
  - libarrow-flight-sql=15.0.2=he4f5ca8_6_cpu
  - libarrow-gandiva=15.0.2=hc1954e9_6_cpu
  - libarrow-substrait=15.0.2=he4f5ca8_6_cpu
  - libasprintf=0.22.5=h661eb56_2
  - libasprintf-devel=0.22.5=h661eb56_2
  - libblas=3.9.0=22_linux64_openblas
  - libboost-headers=1.84.0=ha770c72_2
  - libbrotlicommon=1.1.0=hd590300_1
  - libbrotlidec=1.1.0=hd590300_1
  - libbrotlienc=1.1.0=hd590300_1
  - libcap=2.69=h0f662aa_0
  - libcblas=3.9.0=22_linux64_openblas
  - libclang-cpp15=15.0.7=default_h127d8a8_5
  - libclang13=18.1.5=default_h5d6823c_0
  - libcrc32c=1.1.2=h9c3ff4c_0
  - libcups=2.3.3=h4637d8d_4
  - libcurl=8.7.1=hca28451_0
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  - libedit=3.1.20191231=he28a2e2_2
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  - libevent=2.1.12=hf998b51_1
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  - libgdal=3.8.5=hf9625ee_2
  - libgettextpo=0.22.5=h59595ed_2
  - libgettextpo-devel=0.22.5=h59595ed_2
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  - libgpg-error=1.49=h4f305b6_0
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  - libiconv=1.17=hd590300_2
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  - libopus=1.3.1=h7f98852_1
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  - libspatialite=5.1.0=h6f065fc_5
  - libsqlite=3.45.3=h2797004_0
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  - libsystemd0=255=h3516f8a_1
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  - mysql-common=8.3.0=hf1915f5_4
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  - ncurses=6.4.20240210=h59595ed_0
  - nest-asyncio=1.6.0=pyhd8ed1ab_0
  - netcdf-fortran=4.6.1=nompi_hacb5139_103
  - netcdf4=1.6.5=nompi_py311he8ad708_100
  - networkx=3.3=pyhd8ed1ab_1
  - notebook-shim=0.2.4=pyhd8ed1ab_0
  - nspr=4.35=h27087fc_0
  - nss=3.98=h1d7d5a4_0
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  - numpy=1.26.4=py311h64a7726_0
  - numpy_groupies=0.11.1=pyhd8ed1ab_0
  - openjpeg=2.5.2=h488ebb8_0
  - openssl=3.3.0=hd590300_0
  - orc=2.0.0=h17fec99_1
  - overrides=7.7.0=pyhd8ed1ab_0
  - packaging=24.0=pyhd8ed1ab_0
  - pandas=2.2.2=py311h320fe9a_0
  - pandoc=3.1.13=ha770c72_0
  - pandocfilters=1.5.0=pyhd8ed1ab_0
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  - pexpect=4.9.0=pyhd8ed1ab_0
  - pickleshare=0.7.5=py_1003
  - pillow=10.3.0=py311h18e6fac_0
  - pip=24.0=pyhd8ed1ab_0
  - pixman=0.43.2=h59595ed_0
  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
  - platformdirs=4.2.1=pyhd8ed1ab_0
  - plotly=5.22.0=pyhd8ed1ab_0
  - ply=3.11=pyhd8ed1ab_2
  - pooch=1.8.1=pyhd8ed1ab_0
  - poppler=24.04.0=hb6cd0d7_0
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  - postgresql=16.2=h82ecc9d_1
  - proj=9.4.0=h1d62c97_1
  - prometheus_client=0.20.0=pyhd8ed1ab_0
  - prompt-toolkit=3.0.42=pyha770c72_0
  - properscoring=0.1=py_0
  - psutil=5.9.8=py311h459d7ec_0
  - pthread-stubs=0.4=h36c2ea0_1001
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - pulseaudio-client=17.0=hb77b528_0
  - pure_eval=0.2.2=pyhd8ed1ab_0
  - pwlf=2.2.1=py311h38be061_3
  - pyarrow=15.0.2=py311hd5e4297_6_cpu
  - pyarrow-hotfix=0.6=pyhd8ed1ab_0
  - pycparser=2.22=pyhd8ed1ab_0
  - pydantic=2.7.1=pyhd8ed1ab_0
  - pydantic-core=2.18.2=py311h5ecf98a_0
  - pydantic-settings=2.2.1=pyhd8ed1ab_0
  - pydoe=0.3.8=py_1
  - pygments=2.18.0=pyhd8ed1ab_0
  - pyparsing=3.1.2=pyhd8ed1ab_0
  - pyproj=3.6.1=py311hb3a3e68_6
  - pyqt=5.15.9=py311hf0fb5b6_5
  - pyqt5-sip=12.12.2=py311hb755f60_5
  - pyshp=2.3.1=pyhd8ed1ab_0
  - pysocks=1.7.1=pyha2e5f31_6
  - python=3.11.9=hb806964_0_cpython
  - python-dateutil=2.9.0=pyhd8ed1ab_0
  - python-dotenv=1.0.1=pyhd8ed1ab_0
  - python-eccodes=1.7.0=py311h1f0f07a_1
  - python-fastjsonschema=2.19.1=pyhd8ed1ab_0
  - python-json-logger=2.0.7=pyhd8ed1ab_0
  - python-tzdata=2024.1=pyhd8ed1ab_0
  - python_abi=3.11=4_cp311
  - pytz=2024.1=pyhd8ed1ab_0
  - pyyaml=6.0.1=py311h459d7ec_1
  - pyzmq=26.0.3=py311h08a0b41_0
  - qt-main=5.15.8=hc9dc06e_21
  - rasterio=1.3.10=py311h375a7ea_0
  - rdma-core=51.0=hd3aeb46_0
  - re2=2023.09.01=h7f4b329_2
  - readline=8.2=h8228510_1
  - referencing=0.35.1=pyhd8ed1ab_0
  - regionmask=0.12.1=pyhd8ed1ab_0
  - requests=2.31.0=pyhd8ed1ab_0
  - rfc3339-validator=0.1.4=pyhd8ed1ab_0
  - rfc3986-validator=0.1.1=pyh9f0ad1d_0
  - rich=13.7.1=pyhd8ed1ab_0
  - rioxarray=0.15.5=pyhd8ed1ab_0
  - rpds-py=0.18.1=py311h5ecf98a_0
  - rtree=1.2.0=py311h3bb2b0f_0
  - s2n=1.4.12=h06160fa_0
  - scikit-learn=1.4.2=py311hc009520_0
  - scipy=1.13.0=py311h517d4fd_1
  - seaborn=0.13.2=hd8ed1ab_2
  - seaborn-base=0.13.2=pyhd8ed1ab_2
  - send2trash=1.8.3=pyh0d859eb_0
  - setuptools=69.5.1=pyhd8ed1ab_0
  - shapely=2.0.4=py311h2032efe_0
  - shellingham=1.5.4=pyhd8ed1ab_0
  - simpervisor=1.0.0=pyhd8ed1ab_0
  - sip=6.7.12=py311hb755f60_0
  - six=1.16.0=pyh6c4a22f_0
  - snappy=1.2.0=hdb0a2a9_1
  - sniffio=1.3.1=pyhd8ed1ab_0
  - snuggs=1.4.7=py_0
  - sortedcontainers=2.4.0=pyhd8ed1ab_0
  - soupsieve=2.5=pyhd8ed1ab_1
  - sparse=0.15.1=pyhd8ed1ab_1
  - spdlog=1.13.0=hd2e6256_0
  - sqlalchemy=2.0.30=py311h331c9d8_0
  - sqlite=3.45.3=h2c6b66d_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - statsmodels=0.14.1=py311h1f0f07a_0
  - structlog=24.1.0=pyhd8ed1ab_0
  - tblib=3.0.0=pyhd8ed1ab_0
  - tenacity=8.2.3=pyhd8ed1ab_0
  - terminado=0.18.1=pyh0d859eb_0
  - threadpoolctl=3.5.0=pyhc1e730c_0
  - tiledb=2.22.0=h27f064a_3
  - tinycss2=1.3.0=pyhd8ed1ab_0
  - tk=8.6.13=noxft_h4845f30_101
  - toml=0.10.2=pyhd8ed1ab_0
  - tomli=2.0.1=pyhd8ed1ab_0
  - toolz=0.12.1=pyhd8ed1ab_0
  - tornado=6.4=py311h459d7ec_0
  - tqdm=4.66.4=pyhd8ed1ab_0
  - traitlets=5.14.3=pyhd8ed1ab_0
  - typer=0.12.3=pyhd8ed1ab_0
  - typer-slim=0.12.3=pyhd8ed1ab_0
  - typer-slim-standard=0.12.3=hd8ed1ab_0
  - types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0
  - typing-extensions=4.11.0=hd8ed1ab_0
  - typing_extensions=4.11.0=pyha770c72_0
  - typing_utils=0.1.0=pyhd8ed1ab_0
  - tzcode=2024a=h3f72095_0
  - tzdata=2024a=h0c530f3_0
  - ucx=1.15.0=ha691c75_8
  - udunits2=2.2.28=h40f5838_3
  - uri-template=1.3.0=pyhd8ed1ab_0
  - uriparser=0.9.8=hac33072_0
  - urllib3=2.2.1=pyhd8ed1ab_0
  - wcwidth=0.2.13=pyhd8ed1ab_0
  - webcolors=1.13=pyhd8ed1ab_0
  - webencodings=0.5.1=pyhd8ed1ab_2
  - websocket-client=1.8.0=pyhd8ed1ab_0
  - wheel=0.43.0=pyhd8ed1ab_1
  - xarray=2024.3.0=pyhd8ed1ab_0
  - xarraymannkendall=1.4.5=pyhd8ed1ab_0
  - xcb-util=0.4.0=hd590300_1
  - xcb-util-image=0.4.0=h8ee46fc_1
  - xcb-util-keysyms=0.4.0=h8ee46fc_1
  - xcb-util-renderutil=0.3.9=hd590300_1
  - xcb-util-wm=0.4.1=h8ee46fc_1
  - xerces-c=3.2.5=hac6953d_0
  - xesmf=0.8.5=pyhd8ed1ab_0
  - xhistogram=0.3.2=pyhd8ed1ab_0
  - xkeyboard-config=2.41=hd590300_0
  - xorg-fixesproto=5.0=h7f98852_1002
  - xorg-inputproto=2.3.2=h7f98852_1002
  - xorg-kbproto=1.0.7=h7f98852_1002
  - xorg-libice=1.1.1=hd590300_0
  - xorg-libsm=1.2.4=h7391055_0
  - xorg-libx11=1.8.9=h8ee46fc_0
  - xorg-libxau=1.0.11=hd590300_0
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xorg-libxext=1.3.4=h0b41bf4_2
  - xorg-libxfixes=5.0.3=h7f98852_1004
  - xorg-libxi=1.7.10=h7f98852_0
  - xorg-libxrender=0.9.11=hd590300_0
  - xorg-renderproto=0.11.1=h7f98852_1002
  - xorg-xextproto=7.3.0=h0b41bf4_1003
  - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
  - xorg-xproto=7.0.31=h7f98852_1007
  - xskillscore=0.0.26=pyhd8ed1ab_0
  - xyzservices=2024.4.0=pyhd8ed1ab_0
  - xz=5.2.6=h166bdaf_0
  - yaml=0.2.5=h7f98852_2
  - yarl=1.9.4=py311h459d7ec_0
  - zarr=2.18.0=pyhd8ed1ab_0
  - zeromq=4.3.5=h75354e8_3
  - zict=3.0.0=pyhd8ed1ab_0
  - zipp=3.17.0=pyhd8ed1ab_0
  - zlib=1.2.13=hd590300_5
  - zstd=1.5.6=ha6fb4c9_0
  - pip:
      - c3s-eqc-automatic-quality-control==0.1.2.dev109+gacaba21
      - cacholote==0.10.0
      - cads-toolbox==0.0.2b0
      - cgul==0.0.4
      - coucal==0.0.1b3
      - emohawk==0.0.4b0
      - kaleido==0.2.1
      - pymannkendall==1.4.3
prefix: /data/common/miniforge3/envs/wp5

Anything else we need to know?

No response

@malmans2
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Hi @gmandorl,

That doesn't look like the right Workflow ID. The workflow ID is now explicitly shown in the CIM and it looks like this: eqctier3-1123e4567-e89b-12d3-a456-42665544000
Could you please edit your comment with the correct ID. Let me know when you've done it.

@gmandorl
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Hi @malmans2,

I am sorry, that was the Task ID.
I just updated the my comment with the correct workflow ID.

@malmans2 malmans2 linked a pull request May 24, 2024 that will close this issue
@malmans2
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Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/2d5acec44b288e2958cf06972fbaae9700fe573f/Satellite_ECVs/Atmosphere_Physics_ECVs/satellite_satellite-precipitation_uncertainty_q01.ipynb

Please make sure that the notebook name is correct.

If you need to make modifications (e.g., to address the reviewer's comment), please share here the new version of the notebook and I will provide a new permalink.

Let me know when the notebook is accepted, I will merge the PR into main.

@gmandorl
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I modified the notebook to address the reviewer's comments. The new notebook is

satellite-observations_satellite-precipitation_validation_q01.zip

@malmans2
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malmans2 commented Jun 6, 2024

Hi @gmandorl,

This notebook also has the same issue explained in #64 (comment)
You need to implement this change:

-        'area': [lat_min, lon_min, lat_max, lon_max],
+        'area': [lat_max, lon_min, lat_min, lon_max],

@malmans2 malmans2 added the wp5 label Jun 6, 2024
@gmandorl
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gmandorl commented Jun 6, 2024

Hi @malmans2 ,

I think that almost all my notebooks have that issue.

However, I don't need to change it immediately because I don't have the CIM entries anymore.
When I will receive the feedback from the data providers I will share a new JN with their corrections, and I will also correct this issue.

@malmans2
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malmans2 commented Jun 6, 2024

Sure, no problem.
I'm dealing with a ton of notebooks so I'm writing anything that needs to change to keep track of it.
So I'll probably write this again in other issues.

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