eidr-connect

Global Repository of Infectious Disease Data

Building the docker image, and running the container

Build the docker image
sudo docker build -t eidr-connect .

Run the newly built image using docker-compose
sudo docker-compose -f eidr-compose.yml up -d

Testing with docker

Step 1: build the image

docker build -t eidr-connect-test -f test.Dockerfile .

Step 2: run docker-compose (Step 1 only needs done once)

Note: docker-compose will bring up two containers eidrconnect_app_1 and eidrconnect_mongodb_1 that have an isoloated IP network. They can communicate via hostname app and mongodb, which will be converted into IP addresses via /etc/hosts. The default CMD for app is to start the test server using start-test-server.sh. See the eird-connect-test.yml for the specifics.

docker-compose -f eidr-connect-test.yml up -d
docker exec -it --user meteor eidrconnect_app_1 ./run-tests.sh --mongo_host=mongodb --is_docker=true
docker-compose -f eidr-connect-test.yml down

Testing on OSX

Install testing dependencies

npm install

Run the meteor test application

meteor npm run-script start-test-server

• Or you may customize the script by running directly with the following optional args:

./start-test-server.sh --app_port=3001 --mongo_host=127.0.0.1 --mongo_port=27017 --test_db=eidr-connect-test --prod_db=eidr-connect

Execute the test runner to run all tests

npm run chimp-test

• Or include the watch flag to continuously execute watched tests after file changes

npm run chimp-watch

• Or you may customize the script by running directly with the following optional args:

./run-tests.sh --watch=true --app_uri=http://127.0.0.1 --app_port=3001

Tags

To run only tests with certain tags (https://github.com/cucumber/cucumber/wiki/Tags):

./run-tests.sh --tags=@dev ...

Stop the meteor test application

npm run-script stop-test-server

Running unit tests

meteor test --driver-package practicalmeteor:mocha

License

Copyright 2016 EcoHealth Alliance

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.