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SNPs and SVs cannot share a start position. #3

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edawson opened this issue Oct 3, 2016 · 1 comment
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SNPs and SVs cannot share a start position. #3

edawson opened this issue Oct 3, 2016 · 1 comment

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@edawson
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edawson commented Oct 3, 2016

When inserting a SNP and an SV into the graph the two variants may not share a start position. This is because of the way we do indexing. We also have the problem that SNP IDs are non-contiguous in the graph and break the monotonic increasing nature of SV IDs. Further, SNPs currently can't start a contig graph.
@edawson
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edawson commented Nov 24, 2016

This is now fixed (I think) but further testing may prove otherwise.

@edawson edawson closed this as completed Nov 24, 2016
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@edawson