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Hello,
Looking at this error I would first check that CheckM is properly installed on the system as this error is in a portion of the code that’s parsing the CheckM data.
If you test CheckM and that is properly installed then please send the Binsanity version you are running and what version of Python your running.
On Jun 19, 2021, at 3:27 AM, Sai Ravi Chandra Nori ***@***.***> wrote:
Hi!
I'm trying to run Binsanity-wf, but I'm getting this error. I suspect something is going wrong after checkm analysis.
This is the command I used:
Binsanity-wf --threads 24 -f ./ -l ./final_assembly.fasta -c ./coverage.cov.x100.lognorm -o ./BinsanityWF
Error:
Traceback (most recent call last):
File "/install/software/anaconda2.7.a/bin/Binsanity-wf", line 453, in
checkm_analysis(os.path.join(args.outputdir,str(args.prefix)+"checkm_lineagewf-results.txt"),".fna",str(out_1))
File "/install/software/anaconda2.7.a/bin/Binsanity-wf", line 277, in checkm_analysis
if float(list[12]) >90 and (float(list_[13])<12):
IndexError: list index out of range
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Hi!
I'm trying to run Binsanity-wf, but I'm getting this error. I suspect something is going wrong after checkm analysis.
This is the command I used:
Binsanity-wf --threads 24 -f ./ -l ./final_assembly.fasta -c ./coverage.cov.x100.lognorm -o ./BinsanityWF
Log:
Error:
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