Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Binsanity doesn't produce final bins #60

Open
esraagithub opened this issue May 8, 2022 · 0 comments
Open

Binsanity doesn't produce final bins #60

esraagithub opened this issue May 8, 2022 · 0 comments

Comments

@esraagithub
Copy link

esraagithub commented May 8, 2022

hello
i have already used binsanity 2 months ago and it succced but no i am using it for binning of metatranscriptomic data and it failed to produce the final bins. i tried the Binsanity, Binsanity-lc,Binsanity2 and all failed with "Killed" after 4 kmers step WITHOUT telling me the reason

when i tried run the test data, it failed to give the final bins too but this error was found
2022-05-06 14:49:34] INFO: Reading marker alignment files.
[2022-05-06 14:49:34] INFO: Concatenating alignments.
[2022-05-06 14:49:34] INFO: Placing 75 bins into the genome tree with pplacer (be patient).
[2022-05-06 14:53:45] INFO: { Current stage: 0:07:30.229 || Total: 0:07:30.229 }
[2022-05-06 14:53:45] INFO: [CheckM - lineage_set] Inferring lineage-specific marker sets.
[2022-05-06 14:53:45] INFO: Reading HMM info from file.
[2022-05-06 14:53:46] INFO: Parsing HMM hits to marker genes:
[2022-05-06 14:53:50] INFO: Determining marker sets for each genome bin.

Unexpected error: <class 'FileNotFoundError'>

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant