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Welcome to the BigTrace wiki!

FIJI plugin for tracing and analysis of curvilinear structures in volumetric microscopy datasets
(using BigVolumeViewer for visualization).

At the current moment, it implements 3D ROIs (points, straight/curved lines, planes)
for manual/semi-manual segmentation of lines, curves, and spotty objects.

The plugin is scriptable using ImageJ macros.

Main pages of Wiki to start with:

• How to install plugin
• How to use plugin
• How to cite plugin?

Content:

• Display and navigation
• Creating ROIs
• Panels:
  • View/Clip
  • Tracing
  • Measure
  • Tracking
• Semi-auto tracing
• One click tracing
• ROI shape interpolation
• File format
• Main shortcuts
• Updates history